Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03933 ATGATACAAGAAGATCAAGGACAGTGTTCATCTCAAACAATCAATAACTTTGAAACTTATCAACAAGAGCAGTTTCTCCTTCAACAACAGATGATGAGGCAACAAAATAGTGATCATCATATCTTTGGTGGAGGAAGGTCTATGTTCCCTACAGCAGGAGGTGATCATCAAGTTTCACCAATCTTGCAACAAACATGGTCTATGCAACAACTTCATCATCATCATCCTTTCAACCCTCATGACCCTTTTGTTATTCCTCAACAACAAACTTCACCTTATGCAAGTTTGTTCAATAGAAGGGTTCCTTCTCTTCAGTTTGCATATGATCATCATGCAGGTTCTGAGCATCTTAGGATCATATCAGATACACTTCAACATGGATCAGGTTCAGGACCCTTTGGTGGTTTTCAAGGTGAAGTTGGAAAGATGAGTGCTCAAGAAATTATGGAGGCTAAGGCTCTTGCTGCTTCCAAGAGTCATAGTGAAGCTGAAAGAAGACGCAGAGAGAGAATCAATAACCATCTTGCTAAGCTACGCAGCTTGTTGCCAAGCACAACCAAAACAGACAAAGCATCATTGCTAGCAGAAGTGATACAACATGTAAAAGAATTGAAGCGTCAAACATCATTGATAGCAGAAACAAGTCCAGTTCCAACTGAATGTGATGAATTAACAGTAGATGCTGCAGATGATGATGAAGATTATGGATCAAATGGAAATAAGTTTATCATAAAAGCCTCACTTTGCTGTGATGATAGGTCAGATCTTTTGCCTGAACTAATCAAGACATTGAAAGCATTAAGGTTAAGAACACTCAAAGCTGATATAACAACACTTGGAGGACGTGTTAAGAACGTTTTGTTCATTACTGGTGAAGAAGATGATCATGAATATTGCATTAGTTCAATACAAGAAGCACTCAAAGCTGTGATGGAGAAAAGTGTTGGAGATGAATCTGCTTCTGGAAGTGTCAAGAGACAAAGGACTAATATAATATCAATATCTAATTAA 1011 0.3808 MIQEDQGQCSSQTINNFETYQQEQFLLQQQMMRQQNSDHHIFGGGRSMFPTAGGDHQVSPILQQTWSMQQLHHHHPFNPHDPFVIPQQQTSPYASLFNRRVPSLQFAYDHHAGSEHLRIISDTLQHGSGSGPFGGFQGEVGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTECDELTVDAADDDEDYGSNGNKFIIKASLCCDDRSDLLPELIKTLKALRLRTLKADITTLGGRVKNVLFITGEEDDHEYCISSIQEALKAVMEKSVGDESASGSVKRQRTNIISISN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03933 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 211 IPR036638 GO:0046983
Mepo4g03933 336 Gene3D - 150 211 IPR036638 GO:0046983
Mepo4g03933 336 FunFam transcription factor bHLH30 150 213 - -
Mepo4g03933 336 CDD bHLH_AtAIG1_like 150 228 - -
Mepo4g03933 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Mepo4g03933 336 SMART finulus 161 210 IPR011598 GO:0046983
Mepo4g03933 336 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Mepo4g03933 336 PANTHER TRANSCRIPTION FACTOR BHLH30 39 331 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03933 Mepo-Chr4 48743897 48747232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03933 93 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 64.394 1.79e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g03933 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03933 4 48743897 48747232 Mepo4g03933 4 48743897 48747232 ECH