Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03922 ATGGAATTAGGAGGAAGTTCCACTGATGAAACTATCACAAGCAATGACTCTCTTTCCGCGAACCAATCTACACCGCCGCCAACGCTGAACTCACTCAGTCGCGTTGGCAGCGGTGCTAGCGCTGTCGTGGATCCAGAAATCTACGGCGGCTCCGGTGAGGCGGAGTCTCGCAAGCTTCCGTCTTCGAAATACAAAGGCGTGGTGCCACAGCCGAACGGACGTTGGGGAGCACAGATTTACGAGAAACATCAGCGTGTGTGGCTTGGTACGTTTAACGAAGAAGACGAAGCAGCCAGAGCGTATGACATCGCTGCTTTGAGATTCCGTGGAAAAGATGCTGTTACAAATTCTAAAAGTCTGGCCGGCGTTTGTAACGATGCAGACGAAGGTGAAACTGAGTTTCTAAATTCACATTCTAAGTCGGAGATTGTTGATATGCTTCGGAAACACACCTACGACGATGAGCTTAAGCAAAGCATGCGTGGCATGTGCGGTGGAAGACAGCGGCGTAACGGAGAATTGAATGGTGTGGTTTCACGTGGCGCGTGTGATGCTAAGGCGCGTGAGCAGTTGTTTGAGAAAACGGTTACGCCGAGTGACGTAGGGAAGTTGAATCGGTTGGTGATACCGAAACAGCATGCAGAGAAGCACTTCCCGTTGAATGCAGTTGCTGTCGCCGTCGCAGGCGACGGAGTTTCGCCGGCTGCTGCGGCGGCGAAGGGTTTGCTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGATTTCGTTATTCTTATTGGAATAGTAGCCAGAGTTATGTTTTGACCAAAGGATGGAGCCGGTTCGTTAAGGAGAAGAATCTCCGAGCCGGTGATGCGGTTCGGTTTTTTAGGTCAACTGGACCGGACCGGCAGCTTTACATTGACTGTAAAGCAAGGAGCATTGGTGTTGTCGGTGGTGAGGTTGATAATAATAATAATACCAGTGGCTTGTTTATTACGGTTCGACCGGTAGTTGAACCGGTTCAGATGGTTCGGCTTTTTGGGGTGAATCTTTTGAAACTACCTGGTTCAGATGGAGTTGGTGGTAGTTGCAATGGAAAGAGGAAAGAAATGGAATTGTTTGCCTTAGAATGCAGCAAAAAGCCAAAGATAATTGGAGCCTTATAG 1152 0.4913 MELGGSSTDETITSNDSLSANQSTPPPTLNSLSRVGSGASAVVDPEIYGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNSKSLAGVCNDADEGETEFLNSHSKSEIVDMLRKHTYDDELKQSMRGMCGGRQRRNGELNGVVSRGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVAVAGDGVSPAAAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSIGVVGGEVDNNNNTSGLFITVRPVVEPVQMVRLFGVNLLKLPGSDGVGGSCNGKRKEMELFALECSKKPKIIGAL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03922 383 MobiDBLite consensus disorder prediction 1 37 - -
Mepo4g03922 383 CDD B3_DNA 191 293 IPR003340 GO:0003677
Mepo4g03922 383 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 58 357 IPR044800 GO:0003700
Mepo4g03922 383 SMART B3_2 192 307 IPR003340 GO:0003677
Mepo4g03922 383 Pfam AP2 domain 62 110 IPR001471 GO:0003700|GO:0006355
Mepo4g03922 383 ProSiteProfiles B3 DNA-binding domain profile. 192 308 IPR003340 GO:0003677
Mepo4g03922 383 Gene3D - 181 311 IPR015300 -
Mepo4g03922 383 SUPERFAMILY DNA-binding domain 62 116 IPR016177 GO:0003677
Mepo4g03922 383 CDD AP2 62 116 IPR001471 GO:0003700|GO:0006355
Mepo4g03922 383 Gene3D AP2/ERF domain 62 118 IPR036955 GO:0003700|GO:0006355
Mepo4g03922 383 MobiDBLite consensus disorder prediction 1 65 - -
Mepo4g03922 383 FunFam AP2 domain-containing protein RAP2.8 62 119 - -
Mepo4g03922 383 ProSiteProfiles AP2/ERF domain profile. 63 118 IPR001471 GO:0003700|GO:0006355
Mepo4g03922 383 SMART rav1_2 63 124 IPR001471 GO:0003700|GO:0006355
Mepo4g03922 383 Pfam B3 DNA binding domain 192 298 IPR003340 GO:0003677
Mepo4g03922 383 SUPERFAMILY DNA-binding pseudobarrel domain 190 304 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03922 Mepo-Chr4 48610598 48612188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03922 6 383 B3 DNA Binding Superfamily AT1G25560 57.071 9.50e-138 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Mepo4g03922 B3 1.6e-25 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03922 4 48610598 48612188 Mepo4g03922 4 48610598 48612188 ECH