Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03174 ATGGACACAACTCAGTGGCCTCAGGAGATTATGGTGAAGCCATTAATAGAAGGTAATATTTTAGCAACAAATACATGTGAAAAACCTATGTTGGAGAGGAAGCCAAAACAACAGAAACAAGAAGCAATTAACTGTCCAAGGTGTAATTCAATTAACACAAAATTTTGTTACTACAACAACTATAGTTTGACACAACCAAGATATTTCTGCAAAACATGTAGAAGGTATTGGACTCAAGGTGGATCCATTAGAAACATTCCTGTTGGTGGTGGTTCAAGGAAAAACAACAAAAATAGATCTTCTTCTAATTTTGTTTCAAATCCATCACCTTCAACAAAAAATACACTTGATGAAAACCAAAACCATAAGATCCATCATGAAGAAGGACAAGATCTAAATTTAGGGTTCCCTCACATATCTGATTTGGTTCAGCAAAATAACAACACTTCTTCTTCCACTTCTTCAGCATTGGAGCTTCTTACTGCAGGGTTGAATTCAAGTTCAAGGGGTTTGCATTCTTTCATGCCTGCTCAAGTTCAAGGTTGTGGATTTCCTTTGCAAGATTTTAAGCAAGTACCGATGAATTTCTGTTTAGATGGAATCTCAGGAAGTGGTTATGCAAGTACTCTTGATCATGGTGTTCAAGAGACAATTAGTGAAGGAAGGGTTTTGTTTCCTTTTGAGGATTTGAAACATGTTTCTAGTACAAATACCCCAACAATATTGGATTTGGATCAGAATAATAATAAGGAAGATCAACAAGGATATTCAGCAGGGATTTGGACTGGAATGTTAGGAGGAGGAGGATCATGGTAA 816 0.364 MDTTQWPQEIMVKPLIEGNILATNTCEKPMLERKPKQQKQEAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNNKNRSSSNFVSNPSPSTKNTLDENQNHKIHHEEGQDLNLGFPHISDLVQQNNNTSSSTSSALELLTAGLNSSSRGLHSFMPAQVQGCGFPLQDFKQVPMNFCLDGISGSGYASTLDHGVQETISEGRVLFPFEDLKHVSSTNTPTILDLDQNNNKEDQQGYSAGIWTGMLGGGGSW 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03174 271 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Mepo4g03174 271 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 167 IPR045174 GO:0003700|GO:0006355
Mepo4g03174 271 MobiDBLite consensus disorder prediction 84 117 - -
Mepo4g03174 271 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Mepo4g03174 271 MobiDBLite consensus disorder prediction 89 117 - -
Mepo4g03174 271 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03174 Mepo-Chr4 41059209 41060748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03174 1 271 C2C2-Dof Transcription Factor Family AT4G24060 39.420 9.52e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo4g03174 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03174 - - mtr:25484548 506.523