Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01865 ATGGGAGTTCCGGCCTTCTATAGGTGGCTCGCCGAGAAATACCCGATGGTTATTGTCGATGCGGTCGAAGAAGAACCGGTCGTCATCGAAGGCGTTCAAATTCCAATAGACACCAGTAAACCCAACCCTAATAACCTTGAATATGACAACCTTTACCTTGACATGAATGGTATCATTCATCCTTGCTTTCATCCTGAAGATAGGCCATCCCCGACCTCTTTTGAGGAGGTGTTTGAGTGCATGTTTGATTACATTGATAGGCTGTTTAACATGGTGCGGCCCAGGAAGCTTCTCTTTATGGCTATTGATGGTGTTGCGCCGAGGGCTAAAATGAACCAGCAACGATCTAGGCGATTTAGGGCTGCTAAAGATGCATCTGATGCGGCTATTGAAGAATCAAGGTTACGAGAGGAATTTGAGAGGGAGGGCAGAAAACTTCCTCCTAAAGAGGAATCGGCAACTTTTGATTCAAATGTCATCACACCTGGAACTGAATTCATGGCTGTTCTGTCAGTTGCACTACAGTACTATGTGCATCTTAGGTTGAACAATGATCCTGGTTGGAGTAACATAAAGGTTATTCTTTCTGATGCAAATGTTCCCGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTTCAAAGAAATCTTGAAGGATTCGATCCGAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGGTCTGGCTACCCATGAAGTCCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGTCAAGACAAATGCTTCCTGTGTGGTCAAATGGGTCATATGGCTGCGAACTGTGAAGGAAAGGCTAAAAGGAAGTCAGGAGAATTTGATGAAAAAGGAGACGCTATTGTTGCTAAAAAGCCTTTCCAGTTTCTGAATATTTGGACTCTGAGGGAATATCTGGAGTATGAGATGAGAATACCTAATGCTCCTTTTGAGATCGATTTTGAATGCATATTGGATGATTTTATCTTCATATGCTTTTTCGTTGGCAATGATTTCCTACCACATATGCCTACACTAGAGATTCGTGAGGGTGCGATTAACTTGCTGATGGCAGTATACAAGAAGGAACTTAAGGGAATGGGTGGCTATTTGACAAACGGTAGTAAGCCAAATTTGAGCAGAGTCGAGCATTTTATTCAGGCTGTTGGATCATATGAAGATAGCATATTCCAGAAAAGAGCTCGAATGGAACAGCGAACGGTGGAAAGAATAAAGCGTCAGAAGTCACAAGCAAGAAGAGGAGATGATGTTGGGCCTCAAGTTCAACCCGAGTCTCTAGTTGCAGTTTCTAAATTCCACGGTTCTCGTCTTGCTTCAGCTCCAACGCCTGCACCATTTCAACATTCTGGGCCCACCTCAGTTAAAAAAGGCAATAAAGAAGTCTTTGAGAGGCCTAGTAAAGTTTCGAAGTTATCTTCAGGAGCAACTGTTGCTGCTGCAATTGTTGAAGCCGAGAATAGTCTTGAAATAGATGTTGAAGATAACAGAGACGACTTGAAAATAAAGCTGAAGGGGATACTTCGTGACAAATCTGATGTGTTCAACTCAAAGGGTGGTCATGAGGACAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTCAGACTCCCGAGGAACTTGATGCTATACGGAAAGATGTTGTCTTGAAATACACTGAGGGTCTATGTTGGGTGATGCATTATTACTATGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCCTTTGCGTCTGATCTGAAGGGCCTTGGTGAGCTTAATATTAACTTTGAGTTGGGTACTCCATTCAAACCATTTGATCAGCTTCTTGGAGTTTTTCCCGCTGCAAGCTCTCATGCCCTGCCTGAGCCATATAGGAAACTTATGACTGATCCAACCTCGCCAATTATTGACTTTTATCCAATAGACTTTGATGTGGACATGAATGGCAAACGCTATGCTTGGCAGGGTATTGCGAAGTTGCCTTTTATTGATGAAGTGCGTCTTCTTCAGGAAGTTCGGAAAGTAGAAAACTTGTTAACACCAGAGGAAAAGCGACGGAATGCAATAATGTTTGAGATGCTTTTTGTGAATTCATGTCATCCTCTCTCTGCGTGTATTAGTACACTCGACAACAAATGTAGAAACATGTCCAACTCTGAACGTGCTGATGTTAAGGAAAAAATTGACCCCATTGAAAGTGGTGGAATGAATGGTTACATATCCTTATGTAGTGGAGAACCTTGCCCTCCCATCTTCAGATCCCCTATTGCAGGCATGGAAGACATCATGGATAATCATGTCATATGTGCAATATATAGACTTCCCGATGCACATGAACATATAGCTCGACCACCACATGGAGTTAAGTTTCCAAAGAAGACTGTGACAATTGGGGATCTGAAGCCTGAACCTGTTCCATGGCATGAAGATAATGGGAGGAGATACAACGAAAGTGGAAGGAAAAACCCACCGGGATCCGTTTCTGGACGGGAGCTTGGAGAGGCAGCACACAGACTCGTTGCCAATTCCTTACAGGTCAGGACGGATGGAAATAGATACCATCATCCTAATGGATCAACGATGCCTTATAATGGACCAAGAGGTCATAGGCAATCATGGCCTCGCAATAACTATGAATCACACCCTGGCTATAACTATGAATCACGCCCAGGCTATGCTCCAATTCCACCGCCTTTATCAGCTCCTCCACAGTATGTTCCTTACGCTGCTGCTCCTACTGCGCATTATGGTTATAACCAACCCTACTCTCCACCTGTAATACCTAGTCCTCATCAACATCATTCAAATTCCTTTCCAAGAGGTGACCAAAACCCCAGATCACATCATTCTGATAGAAATAGCAACCATGTTAATGGCGGAAATGCAAGGCATTCCTCAGGAAACAATCAGAATCCCCGGTTTCCGAATACTCAAGGTTCATTTGCCCGTCAAGGTCACCATCACGACGCTGGTCGCCACAATCAACACTTCCAACCATATAGAGCTGACCAGCATTGGACACCACGGGGCAACCCTAGTGGGTACAGGGAATATGGTCAACATTCAGCCAATCAATATTCTCTATTAGATAGAGGAGCAAGTAGGAAGCCAATGCCTCCACCCGGTCATAATCGCAAATAA 3198 0.4353 MGVPAFYRWLAEKYPMVIVDAVEEEPVVIEGVQIPIDTSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTSFEEVFECMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFRAAKDASDAAIEESRLREEFEREGRKLPPKEESATFDSNVITPGTEFMAVLSVALQYYVHLRLNNDPGWSNIKVILSDANVPGEGEHKIMSYIRLQRNLEGFDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKRKSGEFDEKGDAIVAKKPFQFLNIWTLREYLEYEMRIPNAPFEIDFECILDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKELKGMGGYLTNGSKPNLSRVEHFIQAVGSYEDSIFQKRARMEQRTVERIKRQKSQARRGDDVGPQVQPESLVAVSKFHGSRLASAPTPAPFQHSGPTSVKKGNKEVFERPSKVSKLSSGATVAAAIVEAENSLEIDVEDNRDDLKIKLKGILRDKSDVFNSKGGHEDKIKLGEPGWKERYYEEKFSAQTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLGELNINFELGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPTSPIIDFYPIDFDVDMNGKRYAWQGIAKLPFIDEVRLLQEVRKVENLLTPEEKRRNAIMFEMLFVNSCHPLSACISTLDNKCRNMSNSERADVKEKIDPIESGGMNGYISLCSGEPCPPIFRSPIAGMEDIMDNHVICAIYRLPDAHEHIARPPHGVKFPKKTVTIGDLKPEPVPWHEDNGRRYNESGRKNPPGSVSGRELGEAAHRLVANSLQVRTDGNRYHHPNGSTMPYNGPRGHRQSWPRNNYESHPGYNYESRPGYAPIPPPLSAPPQYVPYAAAPTAHYGYNQPYSPPVIPSPHQHHSNSFPRGDQNPRSHHSDRNSNHVNGGNARHSSGNNQNPRFPNTQGSFARQGHHHDAGRHNQHFQPYRADQHWTPRGNPSGYREYGQHSANQYSLLDRGASRKPMPPPGHNRK 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01865 1065 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Mepo4g01865 1065 FunFam 5'-3' exoribonuclease 149 372 - -
Mepo4g01865 1065 CDD PIN_XRN1-2-like 51 312 - -
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 939 1065 - -
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 822 836 - -
Mepo4g01865 1065 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Mepo4g01865 1065 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Mepo4g01865 1065 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 868 904 - -
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 973 1002 - -
Mepo4g01865 1065 FunFam 5'-3' exoribonuclease 1 136 - -
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 451 471 - -
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 948 962 - -
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 415 435 - -
Mepo4g01865 1065 PANTHER 5'->3' EXORIBONUCLEASE 1 1002 IPR027073 -
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 1004 1018 - -
Mepo4g01865 1065 FunFam 5'-3' exoribonuclease 608 708 - -
Mepo4g01865 1065 PIRSF Exonuclease_Xrn2 1 1045 IPR017151 GO:0004534|GO:0005634|GO:0006139
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 816 847 - -
Mepo4g01865 1065 Gene3D - 146 382 - -
Mepo4g01865 1065 Gene3D - 1 136 - -
Mepo4g01865 1065 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Mepo4g01865 1065 Pfam Xrn1 helical domain 325 818 IPR041412 -
Mepo4g01865 1065 Gene3D - 610 708 - -
Mepo4g01865 1065 MobiDBLite consensus disorder prediction 868 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01865 Mepo-Chr4 23943226 23952458 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01865 4 23943226 23952458 Mepo4g01865 4 23943226 23952458 ECH