Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo4g01855 | ATGGGTTCCGATATTCCACAAGATGGATTGAAGAAACTCGAGTATCTTTCACTCGTATCCAAAGTATGCACCGAGTTAGAATCTCACACCGGCACCGGCGACAAAGTTCTCGCCGAATTCATCACTGATTTAGGTCACTCTTCCAACTCCGTTGAAGAATTCGACGCTAAATTGAAAGAAAACGGTGCTGAAATGCCCGATTACTTTGTCAGAACGCTTCTCACTATAATTCATGCGATTCTTCCTCCAAAACCTAAGAAGGGGAGAGAAAATCCGAAAGAGAATGCCAATTCGAACACAAAGTTTAAGGCTTTGGCGATTTCAGATGATAGGGTTCGTGCTGAGAAGCTGAGAGAAGAGATTGAAATTGAAGCTAGAGAGAAACAGAAGCCACCAATGGAAGATGATGGTGGTTATAGAGATAGGGATGGAAGAGATAGACATAGAGATAGATATGATAAAAGAGGGAATGATATAGATAGAGATAGACGTGAAAGAGACGATAAAAGGGGGAGTGATAGAAATCGTGATAGGCGCGAAAGAGATGATACAAGGGGCAATGCTAGAGATATAGATAGGTATGAAAGAGATGATAAAAGAAGAGATGATAGAGATAGGGATCGATACGAAAGAGATGATAAAAGGGGGAATGATAGAGATAGGGATAGGTATAAAAGAGATGATAAAAGGGGGGGTGATAGGGATCGGTATGAGAGGCAAAGGAGAGACGAGTATGAGGAGGATGGAAGTGGGAGGGAGGAGAATGGTGGTGATGAGAAAGGGAGGGGAGGAATAGATACGAGGCGTGGTGGTGGTGGTTCTGGTGAGCCTGAGTTGTATATGGTTTATAAAGGAAGAATTTCGAGGGTGATGGATACGGGGTGTTTTGTTTCGTTGGATGAGTTTAGAGGGAAAGAGGGTTTGGTTCATGTTTCTCAGATGGCTACTAGGAAGATTGTGAATGCTAAGGAGGTTGTTAAGAGGGACCAACAGGTTTATGTGAAGGTGATTTCGGTTTCAGGGTCGAAGTTGAGTTTGTCTATGAGGGATGTTGATCAGCATAGTGGGAAGGATTTACTTCCGTTGAAGAAGAGTTCAGAGGAGGAGGCTTTTAGGACGAATCCACAAGATTCAAAGGATGGGCCGGTGGCGAGGACTGGGCTTTCAGGGATTAGGATTGTGGAGGAGGATGGTATGGGTTCTTCGCGTAGGCCGTTGAAGAGAATGAGCTCTCCTGAGAGATGGGAAGCGAAACAGTTGATTGCTTCGGGGGTTTTGAGTGTTTCAGAGTATCCGACTTATGATGATGAGGGAGATGGAGTGATGTACCAAGAAGAAGGTGCTGAGGAAGAGCTTGAGATTGAGATGAATGAAGATGAGCCCGCTTTTTTGCAAGGGCAGAGCAGATACTCGATGGATATGTCTCCTGTTAAGATCTTTAAGAATCCTGAAGGTTCTCTGGGTCGTGCTGCTGCACTACAGTCCGCACTTATAAAGGAGAGAAGGGAAGTAAGAGAACAACAGCAGCGTACCATGCTTGATTCTATTCCAAAGGATCTCAATCGTCCTTGGGAAGATCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCTCAGGAGTTGAGGGGTGTTGGTTTATCGGCCTATGATATGCCAGAATGGAAGAAGGATGCCTATGGGAAAACCATTACTTTTGGGCAAAGGTCGAAGCTTTCTATTCAAGAACAGAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTCCATGATAATCAGGTCTTGGTTGTGATTGGTGAAACCGGTTCGGGTAAGACTACTCAGGTCACACAGTATCTTGCTGAAGCGGGTTACACCACCAGAGGTAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTTGCTGAAGAGTTTGGGTGTAGATTAGGAGAGGAAGTTGGTTATGCCATTCGATTTGAGGATTGCACTGGACCTGATACTGTAATCAAGTACATGACGGATGGTATGCTTCTTAGAGAAATATTGGTTGATGAGAATCTGTCACAGTATTCTGTTATAATGCTTGATGAAGCCCATGAGAGAACTATTCATACGGATGTTCTTTTCGGACTACTGAAGCAGCTGGTGAAGCGTAGACCCGAGTTGCGATTGATTGTCACATCAGCTACTCTTGATGCTGAAAAGTTTTCAGGATATTTCTTTAACTGTAACATCTTCACAATTCCTGGAAGAACTTTTCCTGTGGAGATACTTTATACCAAACAGCCAGAAAGCGATTACTTGGATGCATCTTTGATCACTGTCCTACAGATTCATTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTAACTGGTCAGGAGGAAATTGATTTTGCTTGCCAGTCTCTCTATGAGCGAATGAAAGGATTAGGTAAGAATGTCCCAGAGCTGATCATTTTACCTGTTTATAGTGCCCTTCCTAGTGAAATGCAATCTAGGATATTCGATCCTGCTCCTCCCGGGAAACGGAAAGTGGTTGTGGCTACAAACATTGCTGAGGCATCTTTGACTATTGATGGAATATTTTATGTTATTGATCCGGGGTTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTCCTTGGTGATAACTCCGATATCACAAGCGTCTGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGAAAGTGTTATCGCCTCTATACCGAGAGTGCATATAGAAATGAAATGTCTCCTACTTCTATTCCAGAGATTCAAAGGATAAATTTGGGCATGACAACTCTTAGCATGAAAGCCATGGGCATAAATGATCTTCTATCATTTGATTTTATGGATCCACCATCACCTCAAGCACTTATTTCCGCCATGGAGCAGCTTTACAGTCTTGGAGCTTTGGATGAAGAGGGTCTTCTAACCAAATTGGGAAGAAAAATGGCTGAGTTTCCTTTGGATCCGCCACTGTCCAAGATGTTGCTTGCCAGTGTAGACCTTGGGTGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAGACTGGCAATATATTTTACAGGCCCAGGGAGAAACAAGCCCAAGCAGATCAGAAAAGGGCAAGGTTTTTCCAGCCAGAGGGTGACCATCTTACGCTGCTTGCTGTTTATGAATCCTGGAAAAATAAAAACTTTTCTGGACCTTGGTGTTTTGAGAACTTTGTTCAATCTCGATCGTTGAGAAGAGCCCAGGATGTAAGGAAACAACTTCTCACCATCATGGATAAGTACAAATTGGATGTTGTGAGCGCTGGAAAAAACTTCACAAAGATTAGGAAGGCTATCACTGCAGGGTTCTTTTTCCATGCAGCAAGAAAGGACCCCCAGGAAGGTTACAGAACACTAGTTGAGAATCAGCCTGTGTATATCCATCCAAGTTCAGCTTTGTTCCAGAGGCAACCAGACTGGGTCATATACCATGAGCTTGTAATGACAACAAAGGAATATATGCGCGAAGTCACAGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTCTTCAAAGTTGCAGATCCCACAAAGATGAGTAAACGGAAGCGTCAAGAGCGTATTGAACCACTTTATGACAGATACCACGAGCCAAACTCATGGCGTTTGAGTAAACGCCGTGCATGA | 3699 | 0.4366 | MGSDIPQDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGHSSNSVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKPKKGRENPKENANSNTKFKALAISDDRVRAEKLREEIEIEAREKQKPPMEDDGGYRDRDGRDRHRDRYDKRGNDIDRDRRERDDKRGSDRNRDRRERDDTRGNARDIDRYERDDKRRDDRDRDRYERDDKRGNDRDRDRYKRDDKRGGDRDRYERQRRDEYEEDGSGREENGGDEKGRGGIDTRRGGGGSGEPELYMVYKGRISRVMDTGCFVSLDEFRGKEGLVHVSQMATRKIVNAKEVVKRDQQVYVKVISVSGSKLSLSMRDVDQHSGKDLLPLKKSSEEEAFRTNPQDSKDGPVARTGLSGIRIVEEDGMGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGVMYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRARFFQPEGDHLTLLAVYESWKNKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA | 1232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo4g01855 | 1232 | Pfam | Helicase associated domain (HA2) | 971 | 1059 | IPR007502 | GO:0004386 | |
| Mepo4g01855 | 1232 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 589 | 752 | IPR014001 | - | |
| Mepo4g01855 | 1232 | MobiDBLite | consensus disorder prediction | 357 | 387 | - | - | |
| Mepo4g01855 | 1232 | Pfam | S1 RNA binding domain | 281 | 342 | IPR003029 | GO:0003676 | |
| Mepo4g01855 | 1232 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 694 | 703 | IPR002464 | - | |
| Mepo4g01855 | 1232 | Coils | Coil | 490 | 510 | - | - | |
| Mepo4g01855 | 1232 | Gene3D | - | 275 | 360 | IPR012340 | - | |
| Mepo4g01855 | 1232 | Gene3D | - | 954 | 1052 | - | - | |
| Mepo4g01855 | 1232 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 569 | 1102 | IPR027417 | - | |
| Mepo4g01855 | 1232 | FunFam | ATP-dependent RNA helicase DHX8 | 275 | 360 | - | - | |
| Mepo4g01855 | 1232 | CDD | S1_DHX8_helicase | 280 | 356 | - | - | |
| Mepo4g01855 | 1232 | CDD | SF2_C_RHA | 756 | 917 | - | - | |
| Mepo4g01855 | 1232 | SMART | helicmild6 | 805 | 909 | IPR001650 | - | |
| Mepo4g01855 | 1232 | Gene3D | - | 551 | 754 | IPR027417 | - | |
| Mepo4g01855 | 1232 | MobiDBLite | consensus disorder prediction | 197 | 266 | - | - | |
| Mepo4g01855 | 1232 | SUPERFAMILY | Nucleic acid-binding proteins | 278 | 353 | IPR012340 | - | |
| Mepo4g01855 | 1232 | CDD | GH2-like_DHX8 | 13 | 80 | - | - | |
| Mepo4g01855 | 1232 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 777 | 950 | IPR001650 | - | |
| Mepo4g01855 | 1232 | Gene3D | - | 755 | 929 | IPR027417 | - | |
| Mepo4g01855 | 1232 | Pfam | DEAD/DEAH box helicase | 585 | 735 | IPR011545 | GO:0003676|GO:0005524 | |
| Mepo4g01855 | 1232 | SMART | ha2_5 | 970 | 1060 | IPR007502 | GO:0004386 | |
| Mepo4g01855 | 1232 | SMART | S1_6 | 278 | 349 | IPR022967 | - | |
| Mepo4g01855 | 1232 | CDD | DEXHc_DHX8 | 574 | 752 | IPR044762 | GO:0000398|GO:0003724|GO:0005524 | |
| Mepo4g01855 | 1232 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 954 | 1053 | - | - | |
| Mepo4g01855 | 1232 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 755 | 929 | - | - | |
| Mepo4g01855 | 1232 | SMART | ultradead3 | 577 | 761 | IPR014001 | - | |
| Mepo4g01855 | 1232 | MobiDBLite | consensus disorder prediction | 83 | 104 | - | - | |
| Mepo4g01855 | 1232 | MobiDBLite | consensus disorder prediction | 122 | 184 | - | - | |
| Mepo4g01855 | 1232 | MobiDBLite | consensus disorder prediction | 197 | 278 | - | - | |
| Mepo4g01855 | 1232 | PANTHER | ATP-DEPENDENT RNA HELICASE | 509 | 1194 | - | - | |
| Mepo4g01855 | 1232 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 545 | 754 | - | - | |
| Mepo4g01855 | 1232 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 1117 | 1192 | IPR011709 | - | |
| Mepo4g01855 | 1232 | ProSiteProfiles | S1 domain profile. | 280 | 349 | IPR003029 | GO:0003676 | |
| Mepo4g01855 | 1232 | MobiDBLite | consensus disorder prediction | 357 | 375 | - | - | |
| Mepo4g01855 | 1232 | Pfam | Helicase conserved C-terminal domain | 779 | 909 | IPR001650 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo4g01855 | Mepo-Chr4 | 23794543 | 23801674 | Dispersed/Transposed |