Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01789 ATGCCATTCAAGAGTATTGTGAGAGAGATCAAGGAGATGAAAGAGGGAATTGGCAACATGTATAGAAGAGGTGTAGAAACCAAACATACACATAGACATGGAAAATCTCACATAGCACCAGAATGTTCCTCACCAACATCACTATCATCACCAACAACACCACCACCACCATCATCATCATCATCATCATCACAGAGTCAATGGGCTAATTTACCTCCTGAGTTACTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACCACTTGGCCATCTCGCCGCGCACTTGTAGCTTGTGCCTCAGTTTGTAGATTGTGGAGAGACATAACAAAGGGTGTTGTTAAGACACTTGAACAGTGTGGTTGGATCACTTTCCCTGTATCACTGAAGCAGCCTGGTCCAAGAGACAATCCAATTCAGTGTTTTATTAAGAGAGAAAGGGCTACTTCCACATATAGTTTATATCTTGGTCTAAGCCCTGCTCTTTCTGGTGATATGAGCAAGCTTCTCTTGGCAGCAAAGAAGATTAGAAGAGCAACATGCACAGAATTTTTAATATCATTGGTTTCTGATGATTTCTCTAGAGCTAACAATACTTACATTGGAAAGTTAAGGTCTAATTTTCTCGGCACCAAGTTCACGATCTTGGATGGTCATCCTCCACATGTTTCTTCGCTTCCATCGAGTTGCAAGTTGCAACAAAAGGTCCATATGAAGCAAATACTTCCAAGGGCTGCTCCTGCTCCTGCTCCTGCTAACTATAAAGTAGCAACTGTATCTTATGAACTCAATGTTCTTCGTACGAGAGGTCCAAGGCGAATGCGGAGTACAATGCACTTAATCCCCATATCTTCAGTCCAAGAAGGAGGAACTGCTCCTACTCCTATGGAATTTACCAATTGCCACAATGAGCATGAATCTGCAAAAGAAAAGAAGCCAGAAGTTGTTGAATTTGGCTCAACTTGCACTGATTTTGCAAAAGAGACACTGATTTTGAAAAACAAAGCACCAAGATGGCATGAACAACTGCAATGTTGGTGTTTGAATTTCAAGGGACGGGTTACGGTGGCTTCGGTGAAGAATTTTCAGCTTGTAGCAGCTGCAGAACCTAGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTTATACTACAATTTGGAAAAATCGGAAAGGACATATTCACCATGGACTATCGATATCCTCTCTCCGCTTTTCAAGCCTTTGCAATCTGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1269 0.4161 MPFKSIVREIKEMKEGIGNMYRRGVETKHTHRHGKSHIAPECSSPTSLSSPTTPPPPSSSSSSSQSQWANLPPELLLDIIQRVEASETTWPSRRALVACASVCRLWRDITKGVVKTLEQCGWITFPVSLKQPGPRDNPIQCFIKRERATSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVSDDFSRANNTYIGKLRSNFLGTKFTILDGHPPHVSSLPSSCKLQQKVHMKQILPRAAPAPAPANYKVATVSYELNVLRTRGPRRMRSTMHLIPISSVQEGGTAPTPMEFTNCHNEHESAKEKKPEVVEFGSTCTDFAKETLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01789 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Mepo4g01789 422 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Mepo4g01789 422 PRINTS Tubby superfamily signature 184 200 IPR000007 -
Mepo4g01789 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Mepo4g01789 422 PRINTS Tubby superfamily signature 253 280 IPR000007 -
Mepo4g01789 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Mepo4g01789 422 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Mepo4g01789 422 PRINTS Tubby superfamily signature 200 224 IPR000007 -
Mepo4g01789 422 Gene3D Tubby Protein; Chain A 125 422 IPR025659 -
Mepo4g01789 422 SUPERFAMILY Tubby C-terminal domain-like 118 422 IPR025659 -
Mepo4g01789 422 PANTHER TUBBY-RELATED 38 420 - -
Mepo4g01789 422 MobiDBLite consensus disorder prediction 27 67 - -
Mepo4g01789 422 Pfam F-box domain 68 114 IPR001810 GO:0005515
Mepo4g01789 422 CDD F-box_AtTLP-like 68 111 - -
Mepo4g01789 422 Pfam Tub family 129 417 IPR000007 -
Mepo4g01789 422 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Mepo4g01789 422 SUPERFAMILY F-box domain 58 111 IPR036047 GO:0005515
Mepo4g01789 422 Gene3D - 61 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01789 Mepo-Chr4 23144319 23146506 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo4g01789 Tub 2.1e-103 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01789 4 23144319 23146506 Mepo4g01789 4 23144319 23146506 ECH