Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00327 ATGGAACCTATAGGTACTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTATTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAAATGATGGGTTGAACAATGGAACACAATCCACATTTTGTACTGCTGAAATTGGTGAAAATGAGCGTATGTTTTATTCTTTTGATCATGCTCATATCCAAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTGATCAAGTACTAGTAAATAATAATATTAATAATTGTATATCCAATGATTTTTGCATGGATGAGAAATTTTTTGTCTCATCTGTTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAGAATGAATGAAGATTCTGCAAGTGATGATCATATTTTGGAGAAAAATGGTTATAATACTCAAATAATGGAATCTGTTGATTTTCACACCAAGCATGAGTTGCAAATGCAGCTCAAAAGGAAACTTGATGTCATAGAAGTGGAGGTTCCGGTTGAAGAAAAAATTAGCAACAAATCAGAGAATCCGAAGAAAAAAACTCGCGTTTCAAAAGATGGGCAAGGATGCATGAAAAATGCAAGGTCAAAGAAGAACCAGAAAGCTGCTATTGCTAGCAATGAAGAGGAAATTACAGAAGAGATTAATAGAGGATCAAATGGAAATAGCTCTAGTAGTAACATTTCTGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGAACAGCAACAGATCCCCAAAGTCTATATGCCAGGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAGTCTTACAAAATCTTGTACCAAACGGAACAAAGGTTGATATTAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACCTTGGACTCAATCTCAACCTCAACAGTTCTCTACCTCTATGA 1116 0.3495 MEPIGTFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGENDGLNNGTQSTFCTAEIGENERMFYSFDHAHIQNSNYISQSQENSYNSNSSASDDTNYYFSYPDQVLVNNNINNCISNDFCMDEKFFVSSVPSLNEIVMEENVRMNEDSASDDHILEKNGYNTQIMESVDFHTKHELQMQLKRKLDVIEVEVPVEEKISNKSENPKKKTRVSKDGQGCMKNARSKKNQKAAIASNEEEITEEINRGSNGNSSSSNISEDDNASQENSGGTTLNSNGKTRASRGTATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00327 371 Pfam Helix-loop-helix DNA-binding domain 295 335 IPR011598 GO:0046983
Mepo4g00327 371 MobiDBLite consensus disorder prediction 245 289 - -
Mepo4g00327 371 MobiDBLite consensus disorder prediction 200 215 - -
Mepo4g00327 371 SMART finulus 291 340 IPR011598 GO:0046983
Mepo4g00327 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Mepo4g00327 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 288 350 IPR036638 GO:0046983
Mepo4g00327 371 Gene3D - 283 342 IPR036638 GO:0046983
Mepo4g00327 371 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 357 - -
Mepo4g00327 371 CDD bHLH_AtIND_like 286 348 - -
Mepo4g00327 371 MobiDBLite consensus disorder prediction 200 298 - -
Mepo4g00327 371 FunFam Basic helix-loop-helix transcription factor 286 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00327 Mepo-Chr4 4970462 4972176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00327 223 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 64.626 1.15e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g00327 HLH 1.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00327 4 4970462 4972176 Mepo4g00327 4 4970462 4972176 ECH