Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00326 ATGGCTCTAGAAGCACTTAACTCACCCACTTCTACTACCCCTAAATTCACCTTTGATGAACCAAATCTTCCATGGATAAAACGTAAACGTTCTAAACGTTCACGTTCATGCACTGAAGAAGAGTATCTTGCTCTTTGTCTCATCATGCTCGCTCGTGGCCACACCAACCGCCATGATTTCAAGCCCTTGAATCCACCAATAACAACCATTGACAACAACAACACCAACACCAAACTCAGTTACAAATGTTCTGTTTGTAATAAAGAGTTTTCTTCTTATCAAGCCCTCGGTGGACACAAAGCAAGTCACCGGAAAAACTCCGTCGGTGATGATCACCCTCACCCATCAACTTCTTCAGCTGCTACTACAAGCTCAGCCAACACAAACGGTGGCGGCGGTGGTGTTAGATCTCATGAGTGTTCGATTTGTCATAGGTCGTTTCCGACAGGACAGGCTTTGGGTGGACACAAACGTTGTCACTACGAAGGTGTTGTTGGCGGTGGTGCTTCTGCTTCTGCTGTAACTGTCTCTGAAGGTGTGGGATCCACACATAGTCATCAACGTGATTTCGATCTGAATATCCCGGCTTTTCCGGACTTTGCTAATAAGATTGGAGAAGATGAAGTTGAAAGTCCTCATCCTGTTATGATGAAGAAGAAAGCTCGTGTTTTCGTGGTGCCCAAGATTGAAATTCCGAATTTTCAGTAA 708 0.4477 MALEALNSPTSTTPKFTFDEPNLPWIKRKRSKRSRSCTEEEYLALCLIMLARGHTNRHDFKPLNPPITTIDNNNTNTKLSYKCSVCNKEFSSYQALGGHKASHRKNSVGDDHPHPSTSSAATTSSANTNGGGGGVRSHECSICHRSFPTGQALGGHKRCHYEGVVGGGASASAVTVSEGVGSTHSHQRDFDLNIPAFPDFANKIGEDEVESPHPVMMKKKARVFVVPKIEIPNFQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00326 235 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Mepo4g00326 235 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Mepo4g00326 235 MobiDBLite consensus disorder prediction 112 134 - -
Mepo4g00326 235 SMART c2h2final6 138 160 IPR013087 -
Mepo4g00326 235 SMART c2h2final6 81 103 IPR013087 -
Mepo4g00326 235 Gene3D Classic Zinc Finger 78 160 - -
Mepo4g00326 235 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 30 196 IPR044653 GO:0003700
Mepo4g00326 235 Pfam C2H2-type zinc finger 138 161 - -
Mepo4g00326 235 Pfam C2H2-type zinc finger 81 105 - -
Mepo4g00326 235 SUPERFAMILY beta-beta-alpha zinc fingers 81 160 IPR036236 -
Mepo4g00326 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Mepo4g00326 235 MobiDBLite consensus disorder prediction 97 135 - -
Mepo4g00326 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 160 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00326 Mepo-Chr4 4932196 4933472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00326 1 231 C2H2 Transcription Factor Family AT1G27730 47.619 2.39e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g00326 zf-C2H2_6 7.1e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00326 4 4932196 4933472 Mepo3g07202 3 85647943 85649038 PCT