Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00300 ATGGATTCAGCAATGAAACTCATGATCGTCCTCATCTTAGCCACTTTCACAGTTTCACTAGCCCTAGACATGTCGATCATCTCCTACGACAAAACCCACCCAGACAAATCAACGAGCAAAAGAACCAACAAAGAAGTGTTGACTATGTACGAAGAGTGGTTAGTGAAACATGGAAAATCCTACAACGGTTTAGGTGAGAAAGACAAAAGGTTTGAGATCTTCAAAGACAACCTTAAATTCATTGATGAACATAACGGTTTGAATTCGACATATAGATTAGGGTTGACCCGGTTCGCGGATCTAACTAACGAAGAGTATAGAAGCAAGTTTTTGGGAACAAAGATCGATCCGAACCGTAGGATGAAGAAATTGGGAGGTTCAAGGAGCAATCGTTATGCGCCACGTGTCGGTGATAAATTGCCTGAATCTGTTGATTGGAGGAAGGAAGGTGCTGTTGTTGGAGTCAAAGACCAAGCAAGCTGTGGGAGTTGTTGGGCATTCTCAGCAATCGCAGCTGTTGAAGGAATAAACAAGATTGTGACAGGAGATCTAATTTCACTATCAGAACAAGAATTGGTGGACTGTGATACATCATACAACGAAGGATGCAATGGTGGACTTATGGATTACGCCTTCGAGTTCATCATCAGTAATGGTGGCATTGACTCTGAAGAGGATTACCCTTACAAGGCTATAGATGGTAGATGTGACCAGAACAGGAAAAATGCTAAAGTTGTCACAATTGATGACTATGAAGATGTTCCTGCTTATGATGAATTGGCCTTGCAAAAGGCTGTTGCAAACCAGCCTATCGCCGTTGCTGTTGAAGGAGGCGGTAGGGAATTCCAGTTATATGAATATGGTGTATTTACCGGTAGATGTGGAACAGCACTAGACCATGGTGTTGCAGCTGTTGGATACGGTACAGAAAACGGGAAAGATTATTGGATTGTGAGAAATTCATGGGGTGGTAGCTGGGGTGAACAAGGTTACATTAGACTCGAACGTAATCTAGCTTCAAGCAGAGCAGGAAAGTGTGGAATTGCGATCGAGCCATCTTATCCAATTAAGAATGGACAGAACCCCCCTAACCCTGGACCATCACCACCTTCACCTATCAAGCCACCATCTGTCTGTGACAGCTACTACAGCTGTGCTGAAGGCTCTACTTGTTGCTGTATTTACGAGTATGGAAGATCTTGCTTTGAGTGGGGATGCTGTCCTCTTGAGTCTGCTACTTGCTGTGATGATCACTACAGTTGCTGCCCTCATGAGTATCCTGTCTGTGACACTCGTGCTGGACTTTGTCTTAAGGGCAAGAACAACCCATTGGGAGTGAAGTCATTCAAACGCACTCCTGCCAAGCCCCACTGGGCCTTTGGAGGTAAGAACAAGATGAGCAATGCGTAA 1410 0.444 MDSAMKLMIVLILATFTVSLALDMSIISYDKTHPDKSTSKRTNKEVLTMYEEWLVKHGKSYNGLGEKDKRFEIFKDNLKFIDEHNGLNSTYRLGLTRFADLTNEEYRSKFLGTKIDPNRRMKKLGGSRSNRYAPRVGDKLPESVDWRKEGAVVGVKDQASCGSCWAFSAIAAVEGINKIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIISNGGIDSEEDYPYKAIDGRCDQNRKNAKVVTIDDYEDVPAYDELALQKAVANQPIAVAVEGGGREFQLYEYGVFTGRCGTALDHGVAAVGYGTENGKDYWIVRNSWGGSWGEQGYIRLERNLASSRAGKCGIAIEPSYPIKNGQNPPNPGPSPPSPIKPPSVCDSYYSCAEGSTCCCIYEYGRSCFEWGCCPLESATCCDDHYSCCPHEYPVCDTRAGLCLKGKNNPLGVKSFKRTPAKPHWAFGGKNKMSNA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00300 469 Pfam Papain family cysteine protease 140 356 IPR000668 GO:0006508|GO:0008234
Mepo4g00300 469 Gene3D Cysteine proteinases 31 358 - -
Mepo4g00300 469 SMART Inhibitor_I29_2 50 106 IPR013201 -
Mepo4g00300 469 SUPERFAMILY Cysteine proteinases 42 356 IPR038765 -
Mepo4g00300 469 SMART pept_c1 140 356 IPR000668 GO:0006508|GO:0008234
Mepo4g00300 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 158 169 IPR000169 -
Mepo4g00300 469 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 40 350 IPR013128 GO:0008234
Mepo4g00300 469 SMART GRAN_2 379 436 IPR000118 -
Mepo4g00300 469 Pfam Granulin 390 437 IPR000118 -
Mepo4g00300 469 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Mepo4g00300 469 Gene3D Granulin 377 439 IPR037277 -
Mepo4g00300 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 315 334 IPR025661 -
Mepo4g00300 469 PRINTS Papain cysteine protease (C1) family signature 158 173 IPR000668 GO:0006508|GO:0008234
Mepo4g00300 469 PRINTS Papain cysteine protease (C1) family signature 315 321 IPR000668 GO:0006508|GO:0008234
Mepo4g00300 469 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Mepo4g00300 469 FunFam Cysteine protease 1 376 439 - -
Mepo4g00300 469 SUPERFAMILY Granulin repeat 376 410 - -
Mepo4g00300 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Mepo4g00300 469 CDD Peptidase_C1A 141 355 IPR039417 -
Mepo4g00300 469 FunFam Cysteine protease 1 25 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00300 Mepo-Chr4 4672144 4677071 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00300 4 4672144 4677071 Mepo1g01858 1 18526028 18529420 ECH
Mepo4g00300 4 4672144 4677071 Mepo2g02358 2 33369450 33371556 ECH
Mepo4g00300 4 4672144 4677071 Mepo4g00300 4 4672144 4677071 ECH
Mepo4g00300 4 4672144 4677071 Mepo3g07160 3 85277481 85283316 PCT