Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00275 ATGGCTGGTTCTTCTGATGATGATATACACCAAACACACCCATCACTTGTTCCTCCTGATTCTCAAGACTTCTCCAATTTATTCAACCAACTCATGGATCCATCTTCTTCATCATCTTTCAATTTTTCTGATCCCTATCCTAATCCTTCCACCATCTCTTACCCTCCTCCTCATTTCTCTTCTTCCTCTTCTGCTCAGAATGATGAAGGTTCAGAGTTACCATCATCAAAGGCTGCCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTACAAAATTTAATTCCAAATTCTAACAAGACAGATAAAGCTTCAATGCTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTACAAATGTTAATGGTGAGAAATGGATATAGCTTGCATCCAATGTCTTTATCAGGAGGATCGCGACCTACGATGTTTCCTCAGACTGAGTTGTTCAATCTTGATGAGGGTAATAGTGGATTTCACAATTCTAACAATGCAATTACCCCGCCTACTGACAACGAATATTTCACACGGCAAGCTTTTAGTTTTCCAGAACAATGCAGCATCTCAAATCAATCTGTTATATTACCCTCCGCGACGAATATAGCTTCATTTGATACCTCATCAAGTTTTCAAACCTCTATTAAGGATAATTTCTGCAACAACATGCCACAACTGATTTTGGATTCAACAAGGATTGGAAAAACTCCTTCTTCAGATGTGTCTTAA 798 0.3872 MAGSSDDDIHQTHPSLVPPDSQDFSNLFNQLMDPSSSSSFNFSDPYPNPSTISYPPPHFSSSSSAQNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGSRPTMFPQTELFNLDEGNSGFHNSNNAITPPTDNEYFTRQAFSFPEQCSISNQSVILPSATNIASFDTSSSFQTSIKDNFCNNMPQLILDSTRIGKTPSSDVS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00275 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 139 IPR011598 GO:0046983
Mepo4g00275 265 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 15 242 IPR031066 -
Mepo4g00275 265 Gene3D - 85 149 IPR036638 GO:0046983
Mepo4g00275 265 MobiDBLite consensus disorder prediction 1 48 - -
Mepo4g00275 265 CDD bHLH_AtPIF_like 90 152 IPR047265 -
Mepo4g00275 265 MobiDBLite consensus disorder prediction 88 104 - -
Mepo4g00275 265 Pfam Helix-loop-helix DNA-binding domain 94 140 IPR011598 GO:0046983
Mepo4g00275 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 150 IPR036638 GO:0046983
Mepo4g00275 265 SMART finulus 96 145 IPR011598 GO:0046983
Mepo4g00275 265 MobiDBLite consensus disorder prediction 55 83 - -
Mepo4g00275 265 MobiDBLite consensus disorder prediction 1 104 - -
Mepo4g00275 265 FunFam Basic helix-loop-helix transcription factor 85 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00275 Mepo-Chr4 4211098 4213485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00275 90 161 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 84.722 1.11e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g00275 HLH 1.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00275 4 4211098 4213485 Mepo4g00275 4 4211098 4213485 ECH