Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00223 ATGCAACAAAACAACGGTTCAGATTCATCAACGCCTTCCGAGACAACGAACAAGCAACAACGACAACAACCACCGGCACCGGTGGCGGTACCACAACAGTGGATTCCGATGCAGTATCCAACAGCGGCGATGGTAATGCCACATCACATGATGCCACCTCAACATTACGCGCCGCCGCCATATGTGCCTTATCACCACCATCATCATCAGTTTCAGCAACCGTTGCACGTGCCGCCACATCAGCATCAGAATCATCAGAATCAGCATGGATCCAATGGAGAAAATAAGACTTTGTGGATTGGTGATTTGCATAGCTGGATGGATGAGAGTTATCTTCATCGCTGTTTTGCTTCTACTGGAGAGATTACCTCCGTCAAGGTTATTCGCAATAAGCACAGTGGTATTTCAGAGGGTTATGGATTTGTGGAGTTCTTTTCACATGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAATTTTGATGCCAAATGCTGATCAAGCTTTCCGTTTGAACTGGGCAACATTTAGCACAGGAGACAAGGGATCGGATAATGTTACTGATCTGTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGTGTGTTGCATGAAACTTTTTCTAGTTCATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTATGATGCTAATACTGGCCGTTCAAAGGGCTATGGATTCGTCAGGTTCGGAGATGAAAGCGAGAGATCTCAGGCTATGACTCAAATGAACGGTGTTTACTGTTCTAGCAGGCCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACCAGGAGGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACAATATTTGTTGGAGGACTCGACTCTAATGTTACAGATGAAGATCTTAAGCAGACATTCTCTCAGTATGGTGAGATAGCCTCGGTTAAGATACCTGTTGGAAAGGGCTGTGGTTTTGTCCAATTTGCAAACAGAAATAACGCTGAAGAGGCTTTGCAGAAGCTAAATGGAACAATGATTGGTAAGCAAACTGTTCGTCTCTCTTGGGGCCGCAATCCAGCATATAAACAGTTTAGGCTTGACGTTGGAAGCTGGGCTGGGCCATATTTTCCATCCCCTATTTATGATGGATATGGATATCCAATGGCTTCTCCTCATCATGACCCAAGTATGTATCCTTTAGCTTATGGGGGTTACCCTATTTATGGAGGCCACTCACAACAAGTAAGCTGA 1275 0.4431 MQQNNGSDSSTPSETTNKQQRQQPPAPVAVPQQWIPMQYPTAAMVMPHHMMPPQHYAPPPYVPYHHHHHQFQQPLHVPPHQHQNHQNQHGSNGENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFVEFFSHATAEKVLQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRLDVGSWAGPYFPSPIYDGYGYPMASPHHDPSMYPLAYGGYPIYGGHSQQVS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00223 424 SMART rrm1_1 97 172 IPR000504 GO:0003723
Mepo4g00223 424 SMART rrm1_1 295 362 IPR000504 GO:0003723
Mepo4g00223 424 SMART rrm1_1 190 264 IPR000504 GO:0003723
Mepo4g00223 424 FunFam Polyadenylate-binding protein RBP47B 177 279 - -
Mepo4g00223 424 Gene3D - 188 264 IPR012677 -
Mepo4g00223 424 CDD RRM3_NGR1_NAM8_like 293 364 - -
Mepo4g00223 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 366 IPR000504 GO:0003723
Mepo4g00223 424 SUPERFAMILY RNA-binding domain, RBD 190 368 IPR035979 GO:0003676
Mepo4g00223 424 MobiDBLite consensus disorder prediction 1 27 - -
Mepo4g00223 424 Gene3D - 271 371 IPR012677 -
Mepo4g00223 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 176 IPR000504 GO:0003723
Mepo4g00223 424 MobiDBLite consensus disorder prediction 272 290 - -
Mepo4g00223 424 CDD RRM2_SECp43_like 188 267 - -
Mepo4g00223 424 SUPERFAMILY RNA-binding domain, RBD 64 177 IPR035979 GO:0003676
Mepo4g00223 424 CDD RRM1_SECp43_like 97 177 - -
Mepo4g00223 424 Gene3D - 62 187 IPR012677 -
Mepo4g00223 424 FunFam Polyadenylate-binding protein RBP47 280 395 - -
Mepo4g00223 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 260 IPR000504 GO:0003723
Mepo4g00223 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 162 IPR000504 GO:0003723
Mepo4g00223 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 359 IPR000504 GO:0003723
Mepo4g00223 424 MobiDBLite consensus disorder prediction 264 290 - -
Mepo4g00223 424 FunFam Polyadenylate-binding protein RBP47B 95 175 - -
Mepo4g00223 424 MobiDBLite consensus disorder prediction 1 33 - -
Mepo4g00223 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Mepo4g00223 424 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00223 Mepo-Chr4 3673728 3678241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00223 98 422 Eukaryotic Initiation Factors Gene Family AT1G71770 27.515 5.94e-31 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00223 4 3673728 3678241 Mepo4g00223 4 3673728 3678241 ECH
Mepo4g00223 4 3673728 3678241 Mepo3g07117 3 84862952 84866839 PCT