Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo4g00197 | ATGTTTCGTGACAGCAGAAATAGCAGCAGCAATGGCAGCAGCAACAACAAAAATAACATTCCTCGTCCACAGTTCATGCAATCCGAACCCCGATTTTCCACAACAGAAGCCTATACCGACGACGACTATGCCATGCGTAGTAGCAGCGCCGCCTCCCCCATGAGCCCTTACTACTATGACCCCGGCAGATTAAGTGGTGAGGGCTCACCAATGATGATGTCACCATGGAATCAAACAACAAATTCACCATTCTCAAAGCCACAATGGTCACAACATGAAGACACACCTCCACAGAATTCACAAATCGGTTCACTGGTCCGCGAAGAGGGTCACATTTATTCTTTAGCTGCTTCCGGTGACTTATTATACACTGGCTCAGACAGCAAGAACATTCGTGTGTGGAAGAATCTTCAAGAATATTGCGGATTCAAATCCAACAGTGGATTGGTGAAAGCAATCATAATCTCCGGTCAAAAGATCTTTACCGGTCACCAAGACGGTAAAATCCGTGTTTGGAAAGTTTCTCTCAAGAACCCTAGCGTTCACAAACGCGCTGGAACATTACCAACACTCAAAGACATTTTCAAAAGCTCAATTAAGCCAAGCAATTATGTCGAGGTTCGAAAACACCGAACTGCATTATGGATCAAACATTCTGATGCAGTTTCATGCCTCAGTCTTTCTCCAGACAAAACCTATCTCTACTCCGCTTCATGGGACAGAACCGTCAAAGTTTGGAGAATCGCTGATTCAAAGTGCTTGGAATCCATTACTTCCCATGAGGACGCAGTTAATGCTGTCGTTTGTGGAAACGACGGAATTGTTTTCTCTGGTTCCGCAGACGGAACCGTTAAAGTGTGGCGAAGAGAACCACGTGGTAAAACAACAAAACATGTAATGGTTAAACAACTTTTAAAACAAGAATGTGCAGTAACTGCTTTAGCAATTGACAGCACAGGTTCAATGGTTTATTGTGGTGCTTCTGATGGATTGGTTAACTTTTGGGAACGTGATAAGCAATTTGAACATGGTGGGGTCCTCAAGGGTCATAAGCTTGCAGTTTTGTGTTTAGCATCTGCTGGGAATTTGGTTTTTAGTGGTTCAGCTGATAAAACTATATGTGTGTGGAAAAGAGACGGAGTTATTCACACGTGTATGTCTGTTTTAACGGGACACGATGGTCCCGTTAAATGTTTAGCAGTGGAGCAGGATCGTGAATCTGATGCTAGAGGCAATCAACGGTGGATATTGTATAGTGGGAGTTTGGATAAATCGGTTAAGGTTTGGAGTGTTTCGGAGAGTATGCAGGTACAACACCGTATGACTTCTATGACTTCTGAAGGGGACTCGATACCTTCGGAATCCGATAGCAGTTACTCCTCAAGTCGGCCCAGTCTTAATAAGAGAAACTAA | 1413 | 0.4381 | MFRDSRNSSSNGSSNNKNNIPRPQFMQSEPRFSTTEAYTDDDYAMRSSSAASPMSPYYYDPGRLSGEGSPMMMSPWNQTTNSPFSKPQWSQHEDTPPQNSQIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSPDKTYLYSASWDRTVKVWRIADSKCLESITSHEDAVNAVVCGNDGIVFSGSADGTVKVWRREPRGKTTKHVMVKQLLKQECAVTALAIDSTGSMVYCGASDGLVNFWERDKQFEHGGVLKGHKLAVLCLASAGNLVFSGSADKTICVWKRDGVIHTCMSVLTGHDGPVKCLAVEQDRESDARGNQRWILYSGSLDKSVKVWSVSESMQVQHRMTSMTSEGDSIPSESDSSYSSSRPSLNKRN | 470 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo4g00197 | 470 | MobiDBLite | consensus disorder prediction | 69 | 100 | - | - | |
| Mepo4g00197 | 470 | MobiDBLite | consensus disorder prediction | 439 | 470 | - | - | |
| Mepo4g00197 | 470 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Mepo4g00197 | 470 | FunFam | BnaA09g28200D protein | 205 | 292 | - | - | |
| Mepo4g00197 | 470 | MobiDBLite | consensus disorder prediction | 71 | 100 | - | - | |
| Mepo4g00197 | 470 | Gene3D | - | 296 | 460 | IPR015943 | GO:0005515 | |
| Mepo4g00197 | 470 | SMART | WD40_4 | 340 | 377 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | SMART | WD40_4 | 297 | 336 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | SMART | WD40_4 | 136 | 173 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | SMART | WD40_4 | 98 | 135 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | SMART | WD40_4 | 250 | 288 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | SMART | WD40_4 | 382 | 430 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | SMART | WD40_4 | 208 | 247 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | SUPERFAMILY | WD40 repeat-like | 106 | 440 | IPR036322 | GO:0005515 | |
| Mepo4g00197 | 470 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 257 | 287 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 347 | 377 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | Gene3D | - | 198 | 295 | IPR015943 | GO:0005515 | |
| Mepo4g00197 | 470 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 215 | 256 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 257 | 287 | - | - | |
| Mepo4g00197 | 470 | PANTHER | F-BOX AND WD40 DOMAIN PROTEIN | 47 | 434 | IPR045182 | - | |
| Mepo4g00197 | 470 | Gene3D | - | 73 | 197 | IPR015943 | GO:0005515 | |
| Mepo4g00197 | 470 | PRINTS | G protein beta WD-40 repeat signature | 417 | 431 | IPR020472 | - | |
| Mepo4g00197 | 470 | PRINTS | G protein beta WD-40 repeat signature | 234 | 248 | IPR020472 | - | |
| Mepo4g00197 | 470 | PRINTS | G protein beta WD-40 repeat signature | 275 | 289 | IPR020472 | - | |
| Mepo4g00197 | 470 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 389 | 439 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | Pfam | WD domain, G-beta repeat | 218 | 246 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | Pfam | WD domain, G-beta repeat | 252 | 287 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | Pfam | WD domain, G-beta repeat | 344 | 377 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | Pfam | WD domain, G-beta repeat | 384 | 430 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | Pfam | WD domain, G-beta repeat | 109 | 135 | IPR001680 | GO:0005515 | |
| Mepo4g00197 | 470 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 215 | 248 | - | - | |
| Mepo4g00197 | 470 | CDD | WD40 | 109 | 430 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo4g00197 | Mepo-Chr4 | 3355269 | 3357193 | Dispersed/Transposed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Mepo3g06566 | 3 | 79588455 | 79593131 | Mepo4g00197 | 4 | 3355269 | 3357193 | PCT |