Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07202 ATGGCTATGGAAGCACTTAACTCACCCACCACCGCTACTCCTTTCACTCCCTTTGAAGAACCAAATCTGAGTTATCTTGAAACACCGTGGACGAAAGGTAAACGTTCAAAGCGTTCTCGTATGGATCAATCTTCATGCACTGAAGAAGAGTATCTCGCTCTTTGTCTCATCATGCTTGCTCGCAGCGGTAACAACAAGACTGAATCGGTGCCGACGCCGCTAACCACCGTTAAACTCAGTCACAAATGCTCAGTCTGCAACAAAGCTTTCTCTTCTTATCAAGCCCTAGGTGGACACAAAGCCAGTCACCGGAAAGCCGTTATGTCCGCAACCACAGCTGAAGATCAGAATCAGACCACCACCACTTCATCCGCCGTGACTACCAGCTCTGCATCCAATGGTAAGAACAAGACCCATGAGTGTTCCATCTGTCACAAATCTTTCCCTACTGGACAGGCTTTGGGAGGACACAAGCGTTGTCACTACGAAGGCAGTATCGGTGCCGGTGCCGGAAGCAGCGCTGTAACTGCCTCTGAAGGAGTTGGATCGTCTCACAGTCACCACCGTGATTTTGATCTTAACCTACCGGCTTTTCCGGACTTTTCAAAGAAGTTTTTCGTTGATGACGAGGTTTCTAGTCCTTTACCTGCTGCAAAGAAGCCCTGTCTTTTCAAGCTTGAAATTCCTCATTGCTGA 696 0.4828 MAMEALNSPTTATPFTPFEEPNLSYLETPWTKGKRSKRSRMDQSSCTEEEYLALCLIMLARSGNNKTESVPTPLTTVKLSHKCSVCNKAFSSYQALGGHKASHRKAVMSATTAEDQNQTTTTSSAVTTSSASNGKNKTHECSICHKSFPTGQALGGHKRCHYEGSIGAGAGSSAVTASEGVGSSHSHHRDFDLNLPAFPDFSKKFFVDDEVSSPLPAAKKPCLFKLEIPHC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07202 231 SUPERFAMILY beta-beta-alpha zinc fingers 81 161 IPR036236 -
Mepo3g07202 231 Pfam C2H2-type zinc finger 81 105 - -
Mepo3g07202 231 Pfam C2H2-type zinc finger 139 162 - -
Mepo3g07202 231 MobiDBLite consensus disorder prediction 1 20 - -
Mepo3g07202 231 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Mepo3g07202 231 Gene3D Classic Zinc Finger 79 161 - -
Mepo3g07202 231 MobiDBLite consensus disorder prediction 109 137 - -
Mepo3g07202 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Mepo3g07202 231 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Mepo3g07202 231 MobiDBLite consensus disorder prediction 108 137 - -
Mepo3g07202 231 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 197 IPR044653 GO:0003700
Mepo3g07202 231 SMART c2h2final6 81 103 IPR013087 -
Mepo3g07202 231 SMART c2h2final6 139 161 IPR013087 -
Mepo3g07202 231 MobiDBLite consensus disorder prediction 1 18 - -
Mepo3g07202 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07202 Mepo-Chr3 85647943 85649038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07202 1 228 C2H2 Transcription Factor Family AT1G27730 50.427 4.10e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g07202 zf-C2H2_6 1.6e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07202 3 85647943 85649038 Mepo3g07202 3 85647943 85649038 ECH
Mepo4g00326 4 4932196 4933472 Mepo3g07202 3 85647943 85649038 PCT