Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07117 ATGCAATCAACGAACGGTTCTGATTCGAAACCAACGGAACAGAGTAATAACAACAGGCCACAACAGAAAACTCCGCCGCCACCTTCACCGCATTCACTTACAGTTCCACAACCGCAGCAGTGGGTTCCGATGCAATATCCACCGGCGGCAATGGTAATGCCGCATCATATGTTACCGCCTCAACATTATCCGCCGCCACCGCACCATTACATGGCTTATCATCATTATCTTCACCACGTGCCTCACGTGCATCATGGATCTAGTGCTGCTGATAATAAAACTCTCTGGGTCGGTGATTTGCACCATTGGATGGATGAAAATTATCTCCACCGATGTTTCGTTTCCACCGGCGAGGTTTTCTCCATTAAGGTTATTCGCAATAAGCAGACTTGTCAAACAGAGGGGTATGGATTTGTGGAATTCAATTCACACGGGGCAGCTGAGAAAGTTTTGCAGACTTATGCTGGGATGTTGATGCCTAACACAGAGCAACCTTTTCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAGCGCTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGACTTAGCTGCAGATGTTACAGATACCATGTTGCTTGAAACTTTTTCTGATAAATACCCTTCAGTTAAAGCTGCTAAAGTTGTTTTTGACGCCAATACCGGACGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGACGATAGTGAAAGGTCTAAAGCTTTGAACGAAATGAATGGTGTTTTCTGTTCTAGCAGGGCAATGCGAATCGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAGCAAGGAGGCCAGTCAAACGGCACACCCAGCCAATCTGACGCTGATTCTACAAATACAACTATATTTGTTGGAGGACTTGACCCTAGTGCTACTGCTGAAGATCTTAGACAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTCGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGACGCATTGCAGAAGCTAAATGGTACAACAGTTGGCAAGCAAACAGTTCGTCTATCTTGGGGCCGCAATCCGGCAAATAAGCAGTTTAGATCTGAATTCGGCAGTCCCTGGAATGGGCCAGCATATTATGGGGGACCTGCTTATGATGGTTATGGATATGCTATGCCGCATCCTTATGACCAGAGCATGTATGCTGCTGCTTACCCCATGTATGGAGGACACCAACAGCAAGTAAGCTAA 1263 0.4553 MQSTNGSDSKPTEQSNNNRPQQKTPPPPSPHSLTVPQPQQWVPMQYPPAAMVMPHHMLPPQHYPPPPHHYMAYHHYLHHVPHVHHGSSAADNKTLWVGDLHHWMDENYLHRCFVSTGEVFSIKVIRNKQTCQTEGYGFVEFNSHGAAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTTVGKQTVRLSWGRNPANKQFRSEFGSPWNGPAYYGGPAYDGYGYAMPHPYDQSMYAAAYPMYGGHQQQVS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07117 420 MobiDBLite consensus disorder prediction 1 20 - -
Mepo3g07117 420 SUPERFAMILY RNA-binding domain, RBD 52 175 IPR035979 GO:0003676
Mepo3g07117 420 SUPERFAMILY RNA-binding domain, RBD 186 365 IPR035979 GO:0003676
Mepo3g07117 420 SMART rrm1_1 293 360 IPR000504 GO:0003723
Mepo3g07117 420 SMART rrm1_1 188 262 IPR000504 GO:0003723
Mepo3g07117 420 SMART rrm1_1 94 169 IPR000504 GO:0003723
Mepo3g07117 420 Gene3D - 280 395 IPR012677 -
Mepo3g07117 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 364 IPR000504 GO:0003723
Mepo3g07117 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 173 IPR000504 GO:0003723
Mepo3g07117 420 FunFam Polyadenylate-binding protein RBP47B 92 172 - -
Mepo3g07117 420 CDD RRM3_NGR1_NAM8_like 291 362 - -
Mepo3g07117 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 368 - -
Mepo3g07117 420 MobiDBLite consensus disorder prediction 264 295 - -
Mepo3g07117 420 Gene3D - 174 279 IPR012677 -
Mepo3g07117 420 MobiDBLite consensus disorder prediction 267 295 - -
Mepo3g07117 420 MobiDBLite consensus disorder prediction 1 38 - -
Mepo3g07117 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Mepo3g07117 420 CDD RRM1_SECp43_like 94 174 - -
Mepo3g07117 420 Gene3D - 92 172 IPR012677 -
Mepo3g07117 420 FunFam Polyadenylate-binding protein RBP47 278 395 - -
Mepo3g07117 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Mepo3g07117 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Mepo3g07117 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 357 IPR000504 GO:0003723
Mepo3g07117 420 CDD RRM2_SECp43_like 186 265 - -
Mepo3g07117 420 FunFam Polyadenylate-binding protein RBP47B 174 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07117 Mepo-Chr3 84862952 84866839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07117 76 371 Eukaryotic Initiation Factors Gene Family AT4G34110 27.632 1.74e-27 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07117 3 84862952 84866839 Mepo3g07117 3 84862952 84866839 ECH
Mepo4g00223 4 3673728 3678241 Mepo3g07117 3 84862952 84866839 PCT