Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06573 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGATTGGTTAAACAAATGGATGGATCAACTTCAAATTCAAAACCAACTCCTTCTATGTTAGAGAGAAAAGCAAGGCCACAAAAAGATCAAGCTTTAAACTGTCCAAGGTGCAATTCAACTAACACAAAATTCTGTTACTACAATAACTATAGCCTCTCACAACCAAGGTACTTTTGCAAAACCTGTAGAAGGTATTGGACTGAAGGTGGTTCTTTAAGAAATGTTCCTGTAGGTGGTGGTTCAAGAAAAAACAAAAGATCAACCTCATCATCATCACCTTCAATCTCACAATCACAACCTCCATCATCAATAACAAAAAATATTATCATTAATCCTGATCTTGCTACAACACAAAATAATTTCCCTCAATCTGCTTCTCAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACAAACAACTGAGGATAATTATAACACAATATCTAAATTCATTGAGCTTCCTTATACCACTGATCAAGACAAAACTACAAGTGCTATGGAGCTTCTGAAAACTGCTTCTTCATCAAGGGGTTTGAATTCTTTTATGCCTATGACTTTGTCTGAGTCTAGTGCAATGTATAATTCAAGTGGTTTTGCTTTGCAAGATTTTAAGCTTGGGGTTAATTTTGGTTTAGAAGGGTTTGAGAATGGTTATGGTGGTTTGCAAGGGATTAATAATCAAGAAGGTTCTGGTGGTGGTGGTGCAAGGATGTTGTTTCCTGTTGTAGAGGATCAGTTGAATAAGCAGCAGCAGCAGCAGCAACAAGTTCCAACTAGTGGTGAGTTTGAACATCAACAAAATAGAACTCAAGGTGATTCTACTGGTTATTGGAATGGAATGTTAGGTGGAGGATCATGGTAG 912 0.3783 MDTAQWAQGNIGLVKQMDGSTSNSKPTPSMLERKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSSSSPSISQSQPPSSITKNIIINPDLATTQNNFPQSASQNPKIHQGQDLNLAYPPQTTEDNYNTISKFIELPYTTDQDKTTSAMELLKTASSSRGLNSFMPMTLSESSAMYNSSGFALQDFKLGVNFGLEGFENGYGGLQGINNQEGSGGGGARMLFPVVEDQLNKQQQQQQQVPTSGEFEHQQNRTQGDSTGYWNGMLGGGSW 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06573 303 MobiDBLite consensus disorder prediction 263 303 - -
Mepo3g06573 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 221 IPR045174 GO:0003700|GO:0006355
Mepo3g06573 303 Pfam Dof domain, zinc finger 40 97 IPR003851 GO:0003677|GO:0006355
Mepo3g06573 303 MobiDBLite consensus disorder prediction 1 43 - -
Mepo3g06573 303 MobiDBLite consensus disorder prediction 84 154 - -
Mepo3g06573 303 MobiDBLite consensus disorder prediction 1 29 - -
Mepo3g06573 303 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Mepo3g06573 303 MobiDBLite consensus disorder prediction 92 154 - -
Mepo3g06573 303 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Mepo3g06573 303 MobiDBLite consensus disorder prediction 263 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06573 Mepo-Chr3 79688055 79689877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06573 29 303 C2C2-Dof Transcription Factor Family AT3G61850 40.268 8.35e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo3g06573 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06573 - - tpra:123909226 484.567