Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02598 ATGAACATGTCAGAGACTGAGAAGGATCATGGTATTATGCTATTTGGTTGGAAGATTCCGGCGCCGGAATGTCGAATTCCGGCCAATTCTGGACCCATGGATACTTGCAGCAGTACAAGGAAAACAGAAGTGGAAATACCTTGTGCAGAAAAAACTGAGCAACAAGACAACTCTTCTGATTCAATGGATAGTAAACAAGAGTCTATACAGGAAAAGGAGCCAATAGTAAATTCCAAGCCCACTGAAGATAACACGGAGACCGGTAATACAGATCAAGATAAACTCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCCCGATGCAACAGTTGGGACACCAAGTTTTGTTATTTCAACAACTATAACGTCAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCGGTAGGTGCTGGGAGGCGGAAGAATAAGCACCTAGCCTCTCAATACCGGCAAATTATAGTAACTACGAATGGAATTCCAACCACGAGGCTAGAAACTACAAACTCATCCGATCACCACCACATATCTACGGATAACGAGACTGTATTGAAATTTGGTCCTGACACCCCTCTTTGCGAATCAATGGAATCAATGCTTCATCTTAGAGACCAGAAAAGAAGTGCTGATGCAAATTCAAATAGTTGTGTGCAACATAGAGAGGAACCGTCCTTGTGTGGATCTTCTGTAACAAATACCGGCAATCAAGGAAATGAAGTATCAGAACACAATGCATCAAATTGGTTGCAGTGTTATCCTGTTTCTCCATGGGTACTACCGATGAATCCAGGTTGGAATAATGTTGCTTCAATGGCAGCAGTTCATCCGACTTCGGTGTCCATGCAATGGTGTCCAACACCTATGTTGGCAATTCCAGGAATTCGGCCACAAAATATACCTTTACAACTTGTAGCAGCATCACATTGGAGTGGACCATCACTTTGCCTCTCACCGCCTTCCTCTACAAGTAACAGTTGCTGCTCAGGAAATGGTTCACCAACCCTAGGAAAGCACAGTAGAGATACAGTTTTCACAGATGAAGACAAAACAGACAAGTGTGTTCCGGTTCGAAAAACAATTAGAACTGATGTCACAAATGCGGCCTCGAAAAGTCCCATTCGGGCTACATTAGCTACCAAGAAGCCTAATGAAGAAGGAAAAGACGGTGTTTTGGGTGGCTCTCAGATTTTGGAAGCCAGCTCAGGAGCTATTTCGCATGCTCATACAATCCAGGAAAGCATATAA 1281 0.4325 MNMSETEKDHGIMLFGWKIPAPECRIPANSGPMDTCSSTRKTEVEIPCAEKTEQQDNSSDSMDSKQESIQEKEPIVNSKPTEDNTETGNTDQDKLLKKPDKIVQCPRCNSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRQIIVTTNGIPTTRLETTNSSDHHHISTDNETVLKFGPDTPLCESMESMLHLRDQKRSADANSNSCVQHREEPSLCGSSVTNTGNQGNEVSEHNASNWLQCYPVSPWVLPMNPGWNNVASMAAVHPTSVSMQWCPTPMLAIPGIRPQNIPLQLVAASHWSGPSLCLSPPSSTSNSCCSGNGSPTLGKHSRDTVFTDEDKTDKCVPVRKTIRTDVTNAASKSPIRATLATKKPNEEGKDGVLGGSQILEASSGAISHAHTIQESI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02598 426 ProSitePatterns Zinc finger Dof-type signature. 105 141 IPR003851 GO:0003677|GO:0006355
Mepo3g02598 426 Pfam Dof domain, zinc finger 100 157 IPR003851 GO:0003677|GO:0006355
Mepo3g02598 426 MobiDBLite consensus disorder prediction 44 79 - -
Mepo3g02598 426 ProSiteProfiles Zinc finger Dof-type profile. 103 157 IPR003851 GO:0003677|GO:0006355
Mepo3g02598 426 MobiDBLite consensus disorder prediction 30 95 - -
Mepo3g02598 426 PANTHER CYCLIC DOF FACTOR 2 3 425 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02598 Mepo-Chr3 35965755 35968271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02598 40 393 C2C2-Dof Transcription Factor Family AT5G39660 38.172 5.81e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo3g02598 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02598 - - cam:101500722 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02598 3 35965755 35968271 Mepo3g02598 3 35965755 35968271 ECH