Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00369 ATGGGAAGGGGTAGGGTTCAGCTGAAACGGATCGAGAACAAAACAAGCCAACAAGTAACTTTTTTCAAAAGAAGAACTGGACTTCTCAAGAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGCACCAAGCATGGAAGACATTTTGGAACGATATGAGAGACAAAATCATACAGAACTTACTGGAGCTACCAATGAAACACAGGGAAATTGGTCCTTTGAATACATGAGGCTCACTGCTAAAGTTCAAGTCTTGGAGAGGAACTTAAGGAACTTTGTGGGAAATGATCTGGACCCCTTGAGTGTGAAAGAGCTTCAGAGTTTGGAGCAACAGCTTGACACATCGCTAAAGCGAATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAGCTGCATAAAAGGGCAAGGACATTGCAGGAGCAAAACAGCAAGCTAGCAAAGACAAAGGAGAAAGAGAAGACAGTGAGTGAACATCCACAAAGATGCCTAGAAACCATAGGCATAGGGCAATGTTCATCCACCCTCAACTTAATTTGTCAGCCAGAAGTGCTACCACCACCACAAAGACTGGTTCCTTCTCTAAATCTCTGTGGGACTTTACAAGCAAGAGGGTCATTGGAATTTGAAGAAGCAGGTGAAGCTCAAACTGTTCCTAGAAGCAATCATAGTCTCATACCACCATGGATGCTCCATCATCTCACCAACTAG 771 0.4215 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSAPSMEDILERYERQNHTELTGATNETQGNWSFEYMRLTAKVQVLERNLRNFVGNDLDPLSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLAKTKEKEKTVSEHPQRCLETIGIGQCSSTLNLICQPEVLPPPQRLVPSLNLCGTLQARGSLEFEEAGEAQTVPRSNHSLIPPWMLHHLTN 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00369 256 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo3g00369 256 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mepo3g00369 256 Coils Coil 123 169 - -
Mepo3g00369 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Mepo3g00369 256 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mepo3g00369 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo3g00369 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g00369 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g00369 256 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo3g00369 256 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Mepo3g00369 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo3g00369 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo3g00369 256 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mepo3g00369 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00369 Mepo-Chr3 4991840 4998343 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo3g00369 K-box 9.3e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00369 3 4991840 4998343 Mepo3g00369 3 4991840 4998343 ECH
Mepo2g03881 2 48048425 48053244 Mepo3g00369 3 4991840 4998343 ECH