Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00368 ATGGGAAGAGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGACAAGTTACATTTGCAAAGAGAAGAAATGGTCTTCTTAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCCGAGGTTGCTCTTATCATCTTCTCTACTCGTGGAAAGCTTTATGAATTTTGTAGCACATCTAACATGCTCAAAACTCTTGATAGGTACCAGAAGTGCAGTTATGGTGCTGTAGAAGTTAGCAAACCTGCCAAAGAACTTGAGAGCAGCTACCGTGAATACTTGAAGCTGAAACAAAGATTTGAAAATCTTCAAAGAGCACAGAGAAATCTTTTAGGGGAAGACTTAGGGCCACTAAGTTCTAAAGATCTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTGAAGCAAGTGAGATCAACAAAGACACAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAACATATCTTGGCTGAAGCAAACAGATCCTTGTCAATCAAGTTGGAGGAAATCAATTCCAGAAATCACTACAGGCAATCATGGGAAGCCGGTGATCAAAGCATGCAATATGGTGCTCAGCAGAATGCTCACTCTCAGAGCTTCTTCCAGCAGCTGGATTGCAATCCTACATTGCAGATTGGTTCTGATTATAGGTACAACAATGTAGCTTCAGATCAGATAGCTTCAACAAGTCAAGCTCAACAACAAGTGAATGGATTTGTTCCTGGATGGATGTTATAA 750 0.4 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKQRFENLQRAQRNLLGEDLGPLSSKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHILAEANRSLSIKLEEINSRNHYRQSWEAGDQSMQYGAQQNAHSQSFFQQLDCNPTLQIGSDYRYNNVASDQIASTSQAQQQVNGFVPGWML 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00368 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mepo3g00368 249 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mepo3g00368 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g00368 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo3g00368 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g00368 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
Mepo3g00368 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo3g00368 249 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Mepo3g00368 249 Coils Coil 124 144 - -
Mepo3g00368 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo3g00368 249 Coils Coil 84 114 - -
Mepo3g00368 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo3g00368 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo3g00368 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo3g00368 249 FunFam MADS-box transcription factor 1 13 87 - -
Mepo3g00368 249 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00368 Mepo-Chr3 4959117 4964238 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo3g00368 K-box 1.1e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00368 3 4959117 4964238 Mepo3g00368 3 4959117 4964238 ECH
Mepo3g00368 3 4959117 4964238 Mepo1g01188 1 11630447 11635665 ECH
Mepo3g00368 3 4959117 4964238 Mepo6g02405 6 32928830 32939944 ECH
Mepo5g03477 5 42978997 42984377 Mepo3g00368 3 4959117 4964238 PCT