Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00161 ATGTTGGAAACAAAAGACTCTGCGATCAAACTGTTTGGAAAAACAATTCCAATTTTGGAGGTTCATGTTGTTGATGAGAGTATTGATGATCATCATCATGATTTTTCTACAAACTCTTCAAATGAGTCTCATAATAATAAGGATGCACAAGAACAAGAGATTGAGAAGAACACATTGGGAGAAAAACCATCGGATGAAAAGAACGAAGATGGAATCCCTACACAATCAACAGAGGAATTCACCAATCCAGATGCAGCCTCTAGAACTGATGAAGAATCTATTACTGTATCCACTGAAAGGAAGGCTGCTACATTGAAAACCTCAAAGACCGAAGAAGAACAGGACGAGACGAGTAATTCACAAGATAAGATCCTCAAAAAACCGGACAAAATAGTTCCTTGTCCTCGCTGTAATAGCATGGACACGAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGTCATTTCTGCAAGAACTGCCAGAGATATTGGACTGCCGGTGGAACCATGAGAAACGTACCGGTAGGCGCCGGTCGTAGAAAAAACAAGAGCTCTTCTTCTCACTATCGCCAGATAACTGTCTCAGAAGCAACACTCCAGAATTCCCGGATACACCCTTCCTTGAAATGCAACGGTACAATTCTTACATTTGGATCTAATTCACCTATATGTGAATCAATGGCATCTGTTTTGAAACTTGCTGATAAAACAGTGCAAAATTACACAAGAAATGGATATCATAAACATGAAGAACTAAGAATTTGTGTTCCTCATACCAGTGAAGAACAAGGCGAGGATCAGTCAAATAAATCATCGGTTACCTCCCCGAAGTCGACGGAAGGTGCAACCACCAATGTATCTCAAGAACAAGCTATGTGGAATGGCCATAGCTTCCCACCACAAGGTGGCTACTTTCCTCATGGAACTCCTTGGCATTTACCATGGAATCCGGTGCAAATGAGCTCACCGATTCCACCTCCGGCCTTCTGTCCACCAGGATTTTCCATGCCATTCTATCCTGCAACAACTTATTGGGGTTGTACTATGCCAAGTGCATGGAACATTCCACGGCAAGCACAACCATCATCACCGAATGGTGCAAACCATAACTCTACTCCAAACTCTCCAACCTTAGGTAAACATTCAAGGGAGGACAACATGCTAAAATCAAGCGAAGGAGATGGTAAGAAAGAAAGTAGCGAAGAAAAGAACCTATGGTTTCCTAAAACTTTGAGGATTGATGACTCGGAGGAGGCAGAAAAAAGCTCTTTCTGGACAACACTTGGGATTAAAAACAACAACACCGACTCAGTTCCTCCGAGAAGACTCTTTCAGGCATTCCCTTTAAAGTGTGACGAGAAAAATCACTCGGTACAAGTGTCTTCAGTCTTGCAAGCCAATCCGGCGGCATTGTCTAGGTCGCTTCACTTTCACGAGACTTCGTAA 1452 0.4242 MLETKDSAIKLFGKTIPILEVHVVDESIDDHHHDFSTNSSNESHNNKDAQEQEIEKNTLGEKPSDEKNEDGIPTQSTEEFTNPDAASRTDEESITVSTERKAATLKTSKTEEEQDETSNSQDKILKKPDKIVPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEATLQNSRIHPSLKCNGTILTFGSNSPICESMASVLKLADKTVQNYTRNGYHKHEELRICVPHTSEEQGEDQSNKSSVTSPKSTEGATTNVSQEQAMWNGHSFPPQGGYFPHGTPWHLPWNPVQMSSPIPPPAFCPPGFSMPFYPATTYWGCTMPSAWNIPRQAQPSSPNGANHNSTPNSPTLGKHSREDNMLKSSEGDGKKESSEEKNLWFPKTLRIDDSEEAEKSSFWTTLGIKNNNTDSVPPRRLFQAFPLKCDEKNHSVQVSSVLQANPAALSRSLHFHETS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00161 483 MobiDBLite consensus disorder prediction 74 103 - -
Mepo3g00161 483 MobiDBLite consensus disorder prediction 46 73 - -
Mepo3g00161 483 Pfam Dof domain, zinc finger 130 186 IPR003851 GO:0003677|GO:0006355
Mepo3g00161 483 MobiDBLite consensus disorder prediction 358 383 - -
Mepo3g00161 483 MobiDBLite consensus disorder prediction 31 124 - -
Mepo3g00161 483 MobiDBLite consensus disorder prediction 261 287 - -
Mepo3g00161 483 MobiDBLite consensus disorder prediction 104 124 - -
Mepo3g00161 483 MobiDBLite consensus disorder prediction 384 405 - -
Mepo3g00161 483 ProSitePatterns Zinc finger Dof-type signature. 134 170 IPR003851 GO:0003677|GO:0006355
Mepo3g00161 483 ProSiteProfiles Zinc finger Dof-type profile. 132 186 IPR003851 GO:0003677|GO:0006355
Mepo3g00161 483 MobiDBLite consensus disorder prediction 358 405 - -
Mepo3g00161 483 MobiDBLite consensus disorder prediction 268 287 - -
Mepo3g00161 483 PANTHER CYCLIC DOF FACTOR 2 5 483 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00161 Mepo-Chr3 2401488 2404427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00161 6 483 C2C2-Dof Transcription Factor Family AT5G39660 42.495 3.19e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo3g00161 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00161 - - mtr:11410541 939.873