Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03525 ATGCCAGGGAAACCAGAAACTGATGATTGGAGAATAAAGCATAGTGAACAGGTTCAGTTGCCATTTTCCATTTACTCTCATCATCAGCCTTGGTGGCTTGAAAATGGCTCCAAACCATCTTCAGCTAATCAGTTAAATGGTTCAATCATGAATAATGTCACACATTCAGAGCCTTTGGTTTCTCCTTCACTTTCTTTAACTGATAACTCAGGCGGGGACGTTGCCAAGGAGCACCAAAACATCAAACAGGCCCTGTCCTCAACCACATTTACCATGGACAAGCACCTTGATCCAAATTCGCAGACGGAACTCGTTGGTCATTCGATTGTTTTAACATCTCCTTATTCAAATGCACAATATGGTCAAATCTTGAATGCTTATGGACAACAAGCTATGATGAATCCTCAGCTATACCAAATGCATCATGCTAGAATGCTTTTGCCACTTAAAATGGAAGAGGAACCTGTGTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGACGAAGACAGTCGCGCGCTAAGGCTGAGCTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCGTATCTTCATGAATCCCGTCACCAACATGCTTTGAGAAGGGCAAGGGGAAATGGTGGTCGTTTTCTCAATACAAAGAAGCTCGAACACAACGATTCTAATGCCGCTCTAGAAAAAGGCAACAATACTGGTGCAACATCAGGTACCAACAATGAGAATCAAGACTCATCTAATGTGTCGCAGCACATGCACAAAATGCAGGGTTTCAACATCAGTTACCATGATGGAAATGGCTTTACAGCACCATGTCATTCACAGGCAAATGGAAAACAGGAGGGTGACTTCTTTGGTAAAAAGAGGGAATCAAATGGTGCTATTAAATGA 885 0.4158 MPGKPETDDWRIKHSEQVQLPFSIYSHHQPWWLENGSKPSSANQLNGSIMNNVTHSEPLVSPSLSLTDNSGGDVAKEHQNIKQALSSTTFTMDKHLDPNSQTELVGHSIVLTSPYSNAQYGQILNAYGQQAMMNPQLYQMHHARMLLPLKMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHQHALRRARGNGGRFLNTKKLEHNDSNAALEKGNNTGATSGTNNENQDSSNVSQHMHKMQGFNISYHDGNGFTAPCHSQANGKQEGDFFGKKRESNGAIK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03525 294 ProSitePatterns NF-YA/HAP2 subunit signature. 157 177 IPR018362 GO:0003677|GO:0016602
Mepo1g03525 294 Gene3D - 152 213 - -
Mepo1g03525 294 MobiDBLite consensus disorder prediction 188 202 - -
Mepo1g03525 294 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 53 257 IPR001289 GO:0003700|GO:0006355
Mepo1g03525 294 SMART cbf3 151 212 IPR001289 GO:0003700|GO:0006355
Mepo1g03525 294 MobiDBLite consensus disorder prediction 222 247 - -
Mepo1g03525 294 MobiDBLite consensus disorder prediction 267 294 - -
Mepo1g03525 294 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 154 209 IPR001289 GO:0003700|GO:0006355
Mepo1g03525 294 PRINTS CCAAT-binding transcription factor subunit B signature 186 209 IPR001289 GO:0003700|GO:0006355
Mepo1g03525 294 PRINTS CCAAT-binding transcription factor subunit B signature 155 177 IPR001289 GO:0003700|GO:0006355
Mepo1g03525 294 MobiDBLite consensus disorder prediction 43 72 - -
Mepo1g03525 294 MobiDBLite consensus disorder prediction 188 247 - -
Mepo1g03525 294 ProSiteProfiles NF-YA/HAP2 family profile. 152 212 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03525 Mepo-Chr1 40882882 40887205 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mepo1g03525 CBFB_NFYA 5e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03525 1 40882882 40887205 Mepo1g03525 1 40882882 40887205 ECH