Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03149 ATGTTCCTTAACCTGCAAAAACTTCTTGAAGCTTTGCAATATTACAATGGGTGTATATTTCACACTGTTCAAAAGGATTTTACTGCTCAGACTGGTGATCCTACTGGAACTGCCACTGCTGGTGATTCTATCTACAAGTTTCTTTATGGGGATCAAGCTCGATTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCAAAGACTGGAACTGTTGCCATGGCTAGTGCAGGAGAGAATTTGAATGCTTCACAGTTCTATATAACTTTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACAGTTTTTGGTGAGGTCGCTGAAGGATTTGAGACTTTGACTAGAATTAATGAGGCTTATGCCGATGGAAAGGGAAGACCATTTAAAAATATCCGAATCAAGCACACTTACATCCTGGAAGATCCTTTTGATGATCCTCCTCAGCTATCTGAGTTCATTCCTAAAGCTTCGCCAGAAGGAAAACCTAAAGACGAGGTTGATGATGAAGTCCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGGAGAACTTGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAACCTCCAGATAATGTACTTTTTGTCTGTAAATTGAATCCGGTTACTGAGGATGAGGACTTGCACACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACCGGCGACAGTTTATGCTATGCTTTTATAGAGTTTGAAGACAAACTGGCATGTGAGCAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGCCAAAGTGTTTCAAAACTGTGGTCACAATACATGCGGAAAGATAATAAGGGTGGTGGTTGCTTCAAATGTGGTTCCACAGATCATATTGCTAGGGATTGCACTGGAGATGCTACAACTAAACAACCCACAAAATTTATCATGAAGGACAGTAATGGCCAGCGGGGTGGAGATAAAGCAAGATACGAAATGGTTTTTGATGGAGATAATACGGAAAGTCCAAAGAGAGAAACGAAACACCAGCGATATGAAAGGGATGACCGATTTGATAAAAAAGGTAGGAAGGAAAATTTGAAAGATGATAGTCATAGAGGTCGTAGGGATCAGGAGATGGTAGGCTCGAATAACAGAGATAGGCATCGCAATAGAAGCAGAGGGCTTGAAGGAAATGGAGATGATAAAGTGCGACTGGAAAGAGGTGCAAGAGATCCGGATTTTCATGCCGAGAAGAAAGACATAGAAAGGCATATGGGAAGAAGACATAGAGATGATGACTACCGACGGAAAGACGAGCTAGACTCGAGAAAAGGAGACTTAGATGATAGATACACAGAAAGACGGGCCAGTCGAGATGATAGGAGAAAAACAGATGACAGCCATTTGGATAGGAAGGATGACAGAGATTATAGGAAGAGAACTGAAGATAGTGGAAGGCAAGATGTGAAGGTTGATTCTGGAAGAAGAAAACGAAGCCCAGATGGCGATGATTACAAACGTAGAAGGAATGATGAGGATTACAGAGAAGATGTGAAGATTGATTCCGGGCGAAGAAAATGA 1665 0.4114 MFLNLQKLLEALQYYNGCIFHTVQKDFTAQTGDPTGTATAGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPFDDPPQLSEFIPKASPEGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYMRKDNKGGGCFKCGSTDHIARDCTGDATTKQPTKFIMKDSNGQRGGDKARYEMVFDGDNTESPKRETKHQRYERDDRFDKKGRKENLKDDSHRGRRDQEMVGSNNRDRHRNRSRGLEGNGDDKVRLERGARDPDFHAEKKDIERHMGRRHRDDDYRRKDELDSRKGDLDDRYTERRASRDDRRKTDDSHLDRKDDRDYRKRTEDSGRQDVKVDSGRRKRSPDGDDYKRRRNDEDYREDVKIDSGRRK 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03149 554 CDD cyclophilin_RRM 2 147 IPR035538 -
Mepo1g03149 554 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 139 IPR002130 GO:0000413|GO:0003755
Mepo1g03149 554 SMART rrm1_1 222 295 IPR000504 GO:0003723
Mepo1g03149 554 SUPERFAMILY Cyclophilin-like 13 155 IPR029000 -
Mepo1g03149 554 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 13 137 IPR002130 GO:0000413|GO:0003755
Mepo1g03149 554 Gene3D - 158 303 IPR012677 -
Mepo1g03149 554 ProSiteProfiles Zinc finger CCHC-type profile. 317 330 IPR001878 GO:0003676|GO:0008270
Mepo1g03149 554 CDD RRM_PPIL4 218 300 - -
Mepo1g03149 554 Gene3D - 309 379 - -
Mepo1g03149 554 MobiDBLite consensus disorder prediction 362 554 - -
Mepo1g03149 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 293 IPR000504 GO:0003723
Mepo1g03149 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 299 IPR000504 GO:0003723
Mepo1g03149 554 SUPERFAMILY RNA-binding domain, RBD 207 311 IPR035979 GO:0003676
Mepo1g03149 554 SMART c2hcfinal6 316 332 IPR001878 GO:0003676|GO:0008270
Mepo1g03149 554 Pfam Zinc knuckle 316 331 IPR001878 GO:0003676|GO:0008270
Mepo1g03149 554 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 20 32 IPR002130 GO:0000413|GO:0003755
Mepo1g03149 554 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 114 IPR002130 GO:0000413|GO:0003755
Mepo1g03149 554 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 85 IPR002130 GO:0000413|GO:0003755
Mepo1g03149 554 FunFam Peptidyl-prolyl cis-trans isomerase 160 301 - -
Mepo1g03149 554 Gene3D - 2 150 IPR029000 -
Mepo1g03149 554 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 11 540 IPR035542 -
Mepo1g03149 554 FunFam 26S proteasome regulatory complex ATPase 54 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03149 Mepo-Chr1 35778964 35786276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03149 14 144 U-box Gene Family AT5G67530 38.168 1.31e-20 93.6