Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo1g03043 | ATGAAAAGAAGAATCCCCTTCCTGCTACTTCAACAACCTTCACCTTCAAAAACCACATATCTTTCCTCCATTAACTTACTCCTTAAACCCCCAAATCACCACAATGCCACACCACCACCACCTTCTCATCGCACATTCAAATCCCAATCCCTCCCTCCCCCAGAACTCATCGAACCATTCTGCGACCTCTCCGACGTCGTCGTTTCATCTAAACAACCTTCTCCATGGTTCACACAAATCCTCAACCTCCTCGACAATTCCCCATCCATGGAATCAAATCTCGATTCCTTCTGCCACCAATTCCTCATCACTCTCTCCCCTTCCTTCGTCGCTCATACTCTCCGTTCCCTTACCAACCACCACACCGCTCTTCGTTTCTTCTCTTGGGCTTCTCATCAACGTCACTATTCCCATTCTCTCGATTGCTACGTTTCGATTATCAACCTTCTTCTTATCTCCCCCAACACCACCACCACGGCAGCCGCTTTAAACATTTTCTCCGAATTTCAACTTAACCGTCTCCCGCTTACACCACCAGCTGCTAATTCCCTCATTAAAAGCTTCGGTAACGCCGGTTTGGTTAACGAGCTTTTATTGGTATGGCGTGGGATGAATGAACAAAACATTCAACCGAGTCTTTTTACTTATAATTCGCTTTTGAATGGACTTGTTGGTTCGTGTTTTATCGAATCAGCAGAGCGTGTTTTTGATGCGATGAAGGAAGGACGAACTAAGCCTGATGTGGTTACTTACAATACTATGATCAAAGGGTATTGTAAAGCGGGGAAAACAAGAAAGGCAATTGAGATGGTTCGTGAAATGGAGGTTATTAACTTGGAGTCTGATGTTGTTAGTTATATGACAGTAATGCAGGCTTGTTATGCTGAAGGTGATGTTGATTTTTGCTTGAGTCTTTATCATGAGATGGAAGATAAGGGATTGGAAGTTCCTTCACATGGTTATAGTTTGGTGATATGTGGGCTTTGTAAGATGGGGAAGGTTTTTGAAGGGTATGCTTTGTTTGAGAATATGATTAGAAATGGTTGCAAGGGTAATAAGGCTGTTTATACTGCTTTGATTGATTGTTATGGGAAGAGTGGGAATTCGGATGGGGCTTTGAGGTTGTTTGAGAGGATGAAAATGGATGGGATTGAACCTGATGAGGTTACTTATAGTGCTATTGTTAATGGGTTGTGTAAGAGTGGGAGAGTGGAGGAAGCTTTGAGTTATTTTCAGTTTTGTAATGAGAATGGTGTTGTTGTTAATGCTGTGTTTTATTCGAGTTTGATTGATGGGCTTGGGAAGGCGGGGAGAGTTGATGAAGCCGAGAAGGTGTTTGATGAAATGGCTGAGAAGGGATGTCCGCCGGATTCGTATTGCTACAATGCGCTCATTGATGGACTTTGTAAGTGTGGGAGGATAGATGATGCTCTTGCGTTGGTTAAGAGGATGGAGCGCGATGGGTGTGAGCAGACTGTGTATACGTTTACTATACTTATCAGTGAGCTTTTTAGGGTGCGTAGGAATGAAGAGGCGGTTAAGATGTGGGATTTGATGATTGACAAAGGGATAACACCGAACGTTGCCTGTTTCAGGGCTCTTTCGATTGGATTGTGTCTTTCGGGGAAGGTTGCAAGGGCTTGTAAAGTGTTGGATGAGCTTGCACCTATGGGGGTTGTTCTTGAAACGGCTTATGAAGATATGATTGGAGCGCTGTGTAAAGCCGGCCGTGTGAAAGAGGCATGTAAATTGGCTGATGGAATTGTTGATAGAGGTAGAGAAATACCTGGGAAGATTAGGACTGTGATGATTCATTCCTTGAGGAAAGCTGGGAATGCTGATTTGGCTATCAAGTTGATGCATAGCAAGATTGGTATTGGGTATGCTAATGACAAGTTGCAGCTGAAAATATCAGTATATTTTCCAAATTTCAGATTGCTCTTTCAAAATAAAAGATTGAAGAAGATATCTTCGTCAATCGTCATGACTGGTTCTAGGCCCAATGGTAGGCCCATGAAAAGGCCCAAGAATGTTCAGGAACAAATGGATGTATGA | 2055 | 0.4316 | MKRRIPFLLLQQPSPSKTTYLSSINLLLKPPNHHNATPPPPSHRTFKSQSLPPPELIEPFCDLSDVVVSSKQPSPWFTQILNLLDNSPSMESNLDSFCHQFLITLSPSFVAHTLRSLTNHHTALRFFSWASHQRHYSHSLDCYVSIINLLLISPNTTTTAAALNIFSEFQLNRLPLTPPAANSLIKSFGNAGLVNELLLVWRGMNEQNIQPSLFTYNSLLNGLVGSCFIESAERVFDAMKEGRTKPDVVTYNTMIKGYCKAGKTRKAIEMVREMEVINLESDVVSYMTVMQACYAEGDVDFCLSLYHEMEDKGLEVPSHGYSLVICGLCKMGKVFEGYALFENMIRNGCKGNKAVYTALIDCYGKSGNSDGALRLFERMKMDGIEPDEVTYSAIVNGLCKSGRVEEALSYFQFCNENGVVVNAVFYSSLIDGLGKAGRVDEAEKVFDEMAEKGCPPDSYCYNALIDGLCKCGRIDDALALVKRMERDGCEQTVYTFTILISELFRVRRNEEAVKMWDLMIDKGITPNVACFRALSIGLCLSGKVARACKVLDELAPMGVVLETAYEDMIGALCKAGRVKEACKLADGIVDRGREIPGKIRTVMIHSLRKAGNADLAIKLMHSKIGIGYANDKLQLKISVYFPNFRLLFQNKRLKKISSSIVMTGSRPNGRPMKRPKNVQEQMDV | 684 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo1g03043 | 684 | SUPERFAMILY | HCP-like | 292 | 486 | - | - | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 422 | 456 | IPR002885 | - | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 492 | 526 | IPR002885 | - | |
| Mepo1g03043 | 684 | PANTHER | PPR_LONG DOMAIN-CONTAINING PROTEIN | 105 | 447 | - | - | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 352 | 386 | IPR002885 | - | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 177 | 211 | IPR002885 | - | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 212 | 246 | IPR002885 | - | |
| Mepo1g03043 | 684 | Pfam | PPR repeat | 214 | 241 | IPR002885 | - | |
| Mepo1g03043 | 684 | Pfam | PPR repeat | 568 | 589 | IPR002885 | - | |
| Mepo1g03043 | 684 | Gene3D | Tetratricopeptide repeat domain | 345 | 412 | IPR011990 | GO:0005515 | |
| Mepo1g03043 | 684 | Gene3D | Tetratricopeptide repeat domain | 413 | 484 | IPR011990 | GO:0005515 | |
| Mepo1g03043 | 684 | Gene3D | Tetratricopeptide repeat domain | 485 | 559 | IPR011990 | GO:0005515 | |
| Mepo1g03043 | 684 | Gene3D | Tetratricopeptide repeat domain | 276 | 344 | IPR011990 | GO:0005515 | |
| Mepo1g03043 | 684 | Gene3D | Tetratricopeptide repeat domain | 562 | 623 | IPR011990 | GO:0005515 | |
| Mepo1g03043 | 684 | Pfam | PPR repeat family | 422 | 470 | IPR002885 | - | |
| Mepo1g03043 | 684 | Pfam | PPR repeat family | 354 | 400 | IPR002885 | - | |
| Mepo1g03043 | 684 | Pfam | PPR repeat family | 282 | 330 | IPR002885 | - | |
| Mepo1g03043 | 684 | NCBIfam | pentatricopeptide repeat | 426 | 458 | IPR002885 | - | |
| Mepo1g03043 | 684 | NCBIfam | pentatricopeptide repeat | 459 | 490 | IPR002885 | - | |
| Mepo1g03043 | 684 | NCBIfam | pentatricopeptide repeat | 494 | 528 | IPR002885 | - | |
| Mepo1g03043 | 684 | NCBIfam | pentatricopeptide repeat | 249 | 275 | IPR002885 | - | |
| Mepo1g03043 | 684 | NCBIfam | pentatricopeptide repeat | 389 | 412 | IPR002885 | - | |
| Mepo1g03043 | 684 | NCBIfam | pentatricopeptide repeat | 214 | 248 | IPR002885 | - | |
| Mepo1g03043 | 684 | NCBIfam | pentatricopeptide repeat | 284 | 315 | IPR002885 | - | |
| Mepo1g03043 | 684 | NCBIfam | pentatricopeptide repeat | 355 | 388 | IPR002885 | - | |
| Mepo1g03043 | 684 | NCBIfam | pentatricopeptide repeat | 321 | 352 | IPR002885 | - | |
| Mepo1g03043 | 684 | Pfam | PPR repeat | 245 | 275 | IPR002885 | - | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 282 | 316 | IPR002885 | - | |
| Mepo1g03043 | 684 | Gene3D | Tetratricopeptide repeat domain | 112 | 275 | IPR011990 | GO:0005515 | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 457 | 491 | IPR002885 | - | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 387 | 421 | IPR002885 | - | |
| Mepo1g03043 | 684 | Pfam | Pentatricopeptide repeat domain | 480 | 534 | IPR002885 | - | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 247 | 281 | IPR002885 | - | |
| Mepo1g03043 | 684 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 317 | 351 | IPR002885 | - | |
| Mepo1g03043 | 684 | MobiDBLite | consensus disorder prediction | 662 | 684 | - | - | |
| Mepo1g03043 | 684 | Pfam | Protein of unknown function (DUF1639) | 660 | 683 | IPR012438 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo1g03043 | 119 | 629 | Glycosyltransferase | AT1G05670 | 26.408 | 3.19e-51 | 188 |