Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02479 ATGGTGGCACCAAATCACAAAAACACACAAGATCATGAAAACCAACAAGGTTCTTCTTCAGAAACCAAGATAACAGATCAACAAAAAGTTGTAATAAAATGTCCAAGATGTGATTCTCCAAACACAAAATTCTGTTACTACAACAATTACAGTCTCACTCAACCAAGACATTTCTGCAAAACATGCAGAAGATATTGGACAAATGGTGGATCGTTGCGTAACGTTCCGATAGGTGGTGGTTGTAGAAAGAAACAAAAACTCAAGCACTCATCATCTTCATCATCTCAAGCCATTAATAAGTACTCATCTTCACCTTCACTTGATTTTCATCTTGGTTCTTTACCCTTACCTTTCTCTTCAAAACCATTTTACTATAACCAATTTTCTTCCATTGGTGGAGTTTCAAGTTCAAACACTTGTGTTTCTACTACAAGTGCTTCAAGTTTTCACCTTGATCCAAATGGTATAAATTTATATCCTTTCTCTTCTTCAAATGGAGGTGGGTTTATTAATGGTGGAAATGAAAATGCAATTCAAGGAATGAACTTTATGAACGTGAGTACTAGTGCTAATAATACTAATTGCACTAGTCTTGCTTCTAGTATTGAATCATTGAGTTGTAGGAACCAGGATTTGCATTTGAAGCTTCAGCAGCAGAGATTAGCAACCTTGTTTGAAGATAATAACAGGAAAGAGAGTGGAACTGTTTTGCTTTCTCAGGTTAGCATTGAAAAGCCTCAACCTATTTTGTTTCAGAATCTTGAGATTTCAAAGGCTGAGATGTTTCAAGTTGGTGGTGGTGGGGATTTAAGAAAAGAAGGTGCAAGTGAATGGTTCTTTGGTATGAATTCTTATTCATCAGTGATGGCTCCTGCAACAACTACTGATCTTAGTGTTTGCATTAATGGTGATCATGATCAAAATGGAAACAACAACTGGATTAATAATGGTGTTCATGCTTGGGGTGATGTGCAGCAGCAGCAACCATATACTGCTTTGCCCTAA 1005 0.3672 MVAPNHKNTQDHENQQGSSSETKITDQQKVVIKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKLKHSSSSSSQAINKYSSSPSLDFHLGSLPLPFSSKPFYYNQFSSIGGVSSSNTCVSTTSASSFHLDPNGINLYPFSSSNGGGFINGGNENAIQGMNFMNVSTSANNTNCTSLASSIESLSCRNQDLHLKLQQQRLATLFEDNNRKESGTVLLSQVSIEKPQPILFQNLEISKAEMFQVGGGGDLRKEGASEWFFGMNSYSSVMAPATTTDLSVCINGDHDQNGNNNWINNGVHAWGDVQQQQPYTALP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02479 334 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Mepo1g02479 334 MobiDBLite consensus disorder prediction 1 25 - -
Mepo1g02479 334 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Mepo1g02479 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 220 IPR045174 GO:0003700|GO:0006355
Mepo1g02479 334 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02479 Mepo-Chr1 25978599 25980191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02479 4 334 C2C2-Dof Transcription Factor Family AT5G65590 37.677 3.53e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo1g02479 zf-Dof 6.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02479 - - tpra:123923236 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01454 5 15229952 15231124 Mepo1g02479 1 25978599 25980191 PCT