Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01967 ATGATCCAAGAACTCTTTGGTAATGGTGCTAGTGCTACCCTCACATCAAGTGAAAGAAACTACTCTTCCATTAATGGAGGAGTTGGAGGAGTTTTACTTCAACCAACAACACAACCTCTTCCTTCTTCTTCATGTCCATCTTCCACAACCACCACCACCACTGCACCAACCACCGTCACCTCAACCACCACCACGTCATCAGAAAACCAACAACATCTGAGGTGTCCAAGATGCGACTCATCGAACACAAAATTTTGTTACTACAACAACTATAACCTCACTCAGCCTCGCCATTTCTGCAAGACTTGCCGTCGTTACTGGACAAAAGGAGGTGCTTTAAGAAACGTTCCCATAGGAGGTGGCTGCCGGAAAAACAAGAGCATCGGCGCCTCAAACAACGCGGCAAAAATAGCTACAAACAAGATGAAAACAGTTTCTTCCGAGTTTATTGGAAGGTCAACAAGTGGTCAAGGGTTTGATCTCGAACACTTTGTTCCACCACAAAGTCAAATCCTATGGGGTTCTCCTCAAAATTCTCATATACTTTCTTTGTTAAGATCTAGTCAAAATCAAAACCCTAACCCTAATCATGTTAAGGAAGAAGGTAATAACTTCATAGGGTCCCATGTTTCTCACATGATGAGTTCTCAACCGTTGATTTCGTCAAATGGTTATGATGGTGTTGGGCATGTTTTATGCAACCCATTTTGGAGAAACAATCATGATAATCAAACTCAACAATTACAAAATGGTGGATTTGTACTTGGGGATCAACAACATCAGCATCATCAAAACAGTGGAATCCAAGAACTATACCATAAACTAAGATCATCTACAACATCATCATCATCAGGTAATAATTATTGCAGTGAGATTTCATCTTCACCAACCGTGTTACTAGGGAACGTGGCTTCAAATTCTTCGTCTATATCCAACATTTTGGAGACAACTTCAGTTACTGGTGGTGAATTAGGGTACTGGAATCCAATCCCAACCCTTACTTGGTCTGATCTTCCAACTACCAATGGTGCAATTCAAACCCAATATCAGTGA 1053 0.4122 MIQELFGNGASATLTSSERNYSSINGGVGGVLLQPTTQPLPSSSCPSSTTTTTTAPTTVTSTTTTSSENQQHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGASNNAAKIATNKMKTVSSEFIGRSTSGQGFDLEHFVPPQSQILWGSPQNSHILSLLRSSQNQNPNPNHVKEEGNNFIGSHVSHMMSSQPLISSNGYDGVGHVLCNPFWRNNHDNQTQQLQNGGFVLGDQQHQHHQNSGIQELYHKLRSSTTSSSSGNNYCSEISSSPTVLLGNVASNSSSISNILETTSVTGGELGYWNPIPTLTWSDLPTTNGAIQTQYQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01967 350 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Mepo1g01967 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 273 IPR045174 GO:0003700|GO:0006355
Mepo1g01967 350 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Mepo1g01967 350 MobiDBLite consensus disorder prediction 35 73 - -
Mepo1g01967 350 Pfam Dof domain, zinc finger 71 127 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01967 Mepo-Chr1 20059049 20060616 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01967 35 126 C2C2-Dof Transcription Factor Family AT5G65590 59.783 1.54e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo1g01967 zf-Dof 9.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01967 - - psat:127074489 529.25