Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01188 ATGGGAAGAGGGAGAGTTGAACTAAAGAGAATAGAGAACAAAATTAATAGACAAGTCACTTTTGCTAAGAGGAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCCCTTATCATCTTCTCTAGCCGTGGCAAACTCTATGAATTCAATAGCACCTCCTGCATGATGAAAACATTGGAGAAATACCACAAGTACAGTTATAATGAACTGGAGACCAACCAACCATCCAATGATACTCTGAATTACCAAGAATATGTGAGATTAAAAGCACATGTAGAAATCTTACAACGTTCACAAAGGAACCTTCTTGGGGAAGATATTGCACAAATGAATACAGGTGAGCTCGAGCAACTTGAAAATCATTTGGAGGAAGCACTTAAGAATATACAATCGACAAAGACTCAATTCATGCTTGATCAACTCAATGATCTTCACAATCGGGAAACGGTGCTTGTTGAAACAAATAACGATCTGAGAAGTAAGTTAGAAGAAACCGATAACTTACAAGTTCCAGGTAGAATATTGGCTTTGGAAGCTGGTGGATCTAATTTCCATCACGCAGAATTTCATTCTCCTCCTCAATCAGATAGGTTTTTGCACCATGTGGGAGTAAATTCCAACTTGCAAATTGGATACAATCCGATGGGTTCTGCTGATGGAGCTTCATCCTTAAGAATGAATGGATTCGACGCTATGACGTGGATGCTCTAA 735 0.3905 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSSRGKLYEFNSTSCMMKTLEKYHKYSYNELETNQPSNDTLNYQEYVRLKAHVEILQRSQRNLLGEDIAQMNTGELEQLENHLEEALKNIQSTKTQFMLDQLNDLHNRETVLVETNNDLRSKLEETDNLQVPGRILALEAGGSNFHHAEFHSPPQSDRFLHHVGVNSNLQIGYNPMGSADGASSLRMNGFDAMTWML 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01188 244 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo1g01188 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo1g01188 244 Coils Coil 116 143 - -
Mepo1g01188 244 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Mepo1g01188 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mepo1g01188 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo1g01188 244 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Mepo1g01188 244 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo1g01188 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo1g01188 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo1g01188 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo1g01188 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo1g01188 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Mepo1g01188 244 FunFam MADS-box transcription factor 1 13 88 - -
Mepo1g01188 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01188 Mepo-Chr1 11630447 11635665 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo1g01188 K-box 6.3e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01188 1 11630447 11635665 Mepo6g02405 6 32928830 32939944 ECH
Mepo3g00368 3 4959117 4964238 Mepo1g01188 1 11630447 11635665 ECH
Mepo1g01188 1 11630447 11635665 Mepo1g01188 1 11630447 11635665 ECH