Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0992 ATGGAAAATTCAGACCACGACGAACCAGACAAGAAGAAGCCTCATCTTCTCACTCCAGTTTCTTCCCGCGTGACGCGAATTTCAAGCAACCATTCTCCTAACAGTAAAAATGCCGATGCAGGCGTCTTACAGCTCCAGAATCAGCAGCTTGTTCAGCAGACTGAAGTCCAGAAACAGGCTATACAGGATCTTGAAGAAAAGACTAGAGAATTAAAAGAAAGACAAAATTCATACGATGACATATTAATTACAATCAACCAACACTGGGATCAGTTGGTTGATGATATGGCCCTCCTCGGGATACAAGCTGGGAGAGGCAAAGATTCTTTGGAAACTTTGGATTACCTGGATAATCCTCAAGGTTCCCTTCCCTCGTGTCCTCCAGATGATCTACTTCTATGTAGATTAATCCAGAAAGATTCTATTAAGGGAAACAGTAATGATGAGATCACTAATTATGTTGACGAAGCCCTTGCTTTGCGTCGGTTATCTACTAGGGAATTGTTGAAACTCATTCAAGATACCGTTGATGAACAGATGGAAAGAATTGAGGATATAGGTCAGGTTTTACACGAAGATTTATCCACGGAAGATGTTATCATCCAAATGTCTAAGATTGATGATATGACGAAAAAGGAGGCTGACAATTTTCGTGAAGTGATTGATACTCTCCATGCAAAACACAAAGAGTATACTGTTGGTATTCAGAATTATATAAACGAGTGCTCACAAGATCAATCTGACATAAAACGCCTTACAGGAGAGCTTGACGAGATCGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAATGCTGATGCAGTGAATGGAAACCTGTCTCCTGAGAAGCCTGCAGACCGTGCCATGGGTTTGTCCGAGTTGAAGAATTCAATTGAGGAAGCCAAGATAATAAATGCTGATCGTCTTTCCGAGCTTCAAGATGCACGGGAAGGAAATCAAATATTGACAAAGCAATTCCAAGAACTTCAGAATGAACTAATTGATGATAAATATGTACGCACTTCCCGAGTATACTCTTTGGCAAATGAACAACTTCAACATTGGATCGCTGAATTGGATAGATATAAATCATTGACAGAGTCTCTGCAGGCTGGCAGGGTTAATATCGCAAAACGGGAGAAGGAATTGAATTTGAAATTGGAGTCTGCTGTTGGTTCAAGGCATATCCATGACACTTCTGACTCTAGGACTGATGAGCTCAAGATTCAGTTGCAAAAGTGTATTATTGAAAGGAACGATCTTGAAATCAAGATGGAAGAGGCCAAACAGGATACTGGGAGAAAAGATATCAAAGCTGAGTTTCGTGTGATGTCTTCAGCTTTATCTAAAGAAATGGGGATGATGGAAACACAGTTGAAGCGGTGGAAAGATGCAGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTAAGAGCAAATTTGAGTGGGAAGACAAGCGAACTCAAGAGCCTTGCAAACAATTGTGCTCAACAGGTTTTGGAAATAAAATCTTCAAAAGCATTGATTGAAAAGTTACAGGAGGAGAATCAGGAGTTAGAATTTGTTCTGGATATGTATGGCCTGGAGGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAGTAAAGCTCGTTCTCAAGCTGAAATGCTAAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTTGGCCGCAGAAGCTGAAATAGAAGAGTTAAAGGCCCAGCTCGATGCAACTGAAAGAAAAAAATTGGAGATGAAAGAGGCTATTAAAGTTAAAGAGGCTGAGGCAGAAACCTATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAAGTGGCTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAATTACATAGCACTTTACTGTCTGAAAAGCAAGCCGTCGCTGATCAACTTCAACAGATTAATTCTTTGATAGAAAATTCAAAGAAGAAGATTGCAAGTAGTGAAAAACAGATCGAATGCATTCTATCAGAAGCCGCTAAATGTACTCAAGATGAAAAACACCTCGCAGACGCCTTAGAGTTTGTCAGGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTGTTGCTTCAGCTTCAGAGAAAGAGTACGACCAAATTCAGAAAGATGTAGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGGAAGTGAACAACCAAATTGCTGAGCTGAATTCTGAAGCCAGAGTAACTGCAGTACAACAACTTGAAGAAGAAATAAAAGTTTGTAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTGTGAAGTGTTATCATCTGTTCTGCAATCCATGTATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGCGATGTTCGCTTTGTTAAAATATGA 2643 0.4041 MENSDHDEPDKKKPHLLTPVSSRVTRISSNHSPNSKNADAGVLQLQNQQLVQQTEVQKQAIQDLEEKTRELKERQNSYDDILITINQHWDQLVDDMALLGIQAGRGKDSLETLDYLDNPQGSLPSCPPDDLLLCRLIQKDSIKGNSNDEITNYVDEALALRRLSTRELLKLIQDTVDEQMERIEDIGQVLHEDLSTEDVIIQMSKIDDMTKKEADNFREVIDTLHAKHKEYTVGIQNYINECSQDQSDIKRLTGELDEIVAELEESRRKLVSLKMQKDAAMGMNSSNADAVNGNLSPEKPADRAMGLSELKNSIEEAKIINADRLSELQDAREGNQILTKQFQELQNELIDDKYVRTSRVYSLANEQLQHWIAELDRYKSLTESLQAGRVNIAKREKELNLKLESAVGSRHIHDTSDSRTDELKIQLQKCIIERNDLEIKMEEAKQDTGRKDIKAEFRVMSSALSKEMGMMETQLKRWKDAALEAVSLREKAHSLRANLSGKTSELKSLANNCAQQVLEIKSSKALIEKLQEENQELEFVLDMYGLEDYQKSLPEVRESESKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLLAAEAEIEELKAQLDATERKKLEMKEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSTLLSEKQAVADQLQQINSLIENSKKKIASSEKQIECILSEAAKCTQDEKHLADALEFVRWELADAEKELKLLKSVASASEKEYDQIQKDVEAFEKELDSERSSRKKLEEELMEVNNQIAELNSEARVTAVQQLEEEIKVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0992 880 Coils Coil 427 447 - -
Mal8g0992 880 Coils Coil 47 81 - -
Mal8g0992 880 Coils Coil 249 276 - -
Mal8g0992 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Mal8g0992 880 MobiDBLite consensus disorder prediction 1 38 - -
Mal8g0992 880 PANTHER RING FINGER PROTEIN-RELATED 22 880 IPR013956 GO:0004842|GO:0010390
Mal8g0992 880 MobiDBLite consensus disorder prediction 21 38 - -
Mal8g0992 880 CDD RING-HC_BRE1_like 826 867 - -
Mal8g0992 880 SUPERFAMILY RING/U-box 827 871 - -
Mal8g0992 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 22 880 - -
Mal8g0992 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Mal8g0992 880 Coils Coil 583 631 - -
Mal8g0992 880 Coils Coil 688 722 - -
Mal8g0992 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Mal8g0992 880 Coils Coil 737 806 - -
Mal8g0992 880 Coils Coil 513 547 - -
Mal8g0992 880 MobiDBLite consensus disorder prediction 1 17 - -
Mal8g0992 880 SMART ring_2 828 866 IPR001841 -
Mal8g0992 880 Coils Coil 328 348 - -
Mal8g0992 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0992 Mal-Chr8 14851389 14862377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0992 828 875 RAD5 or RAD16-like Gene Family AT5G05130 35.417 7.40e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0992 K10696 - gmx:100796610 1258.05