Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g4639 ATGTTGGAAGCAAAAGACCCTGCGATCAAGCTTTTTGGGAAGACGATTCCGGTACCGGAGATCTCTGCCGGATCCGGTGACTCTACCGGAGCTCCGGCTTCACCTTCTGGTGATGCTGTTGATGATGGTATCATTCAAAACCATGCTTCTTCCATGGATGAAGAAGAGAGAGAAATTGATGAGGACACAATGGAAGAGGAACCGGCCGACTGTAAGAAGGAAAAAGATGAAGCTCTCACCCAATCGTTAGAAAAGACTGCTAATCTAGACACTGCCTCAAGATTAGTGAAAGAATCTATAATTCCCTCCACCAAGGATGAGCAGAAGACTAAAGAACAGGCCGAGAATTCACAAGATAAGACCCTGAAAAAGCCAGACAAAATACTACCGTGCCCCCGTTGTAATAGCATGGAAACCAAATTCTGCTACTACAATAATTATAATGTAAACCAGCCTCGCCATTTCTGCAAGAAATGCCAGAGATACTGGACTGCTGGTGGAGCCATGAGAAATGTGCCTGTAGGCGCCGGTCGTAGGAAGAACAAGAATTCGGCTTCTCACTTTCGCCAGATAACTGTACCCGAAACAGCCGTTCAAAATTCTCAATCCGATTCACCGAACGGAGTCCATCATCCTTCGCTGAACTGTAACGGCACAATATTTACGTTCAGGACCGATACACCCTTGTGTGAATCAATGGAATCTGCATTGAACCTTGCTGATAAAGGAGTTAACATTTCCCTTAAAAACGGATTCAATAGACCGGAAGAACTACGGGTTCATGTTCCCTCTGTTGGTGAAGAAAAGAGTGATGACCATTCCAATAAATCTTCAGACGCATCAACAACACCGACAGAAGATGCAGCTGCCAACAATACTCTTGAACAAGTCATGCCAAATTGTCAAAGCTTCCCATCACAAGTTCCGTACTACCCCGGTGCCCCTTGGCTTTTGCCATGGAATCAAGTACAACCACCACCTGCATTTTTCCCACAAGGATTTGCCATGCCACTCTATCCTCCACCGGCTTATTGGGGTTTTACCATGCCCAGTGCGTGGAACAATCCATGGCTGGCACAACCTTCGTCACCAAATAGTGCAGCCGTTAACTCCGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGCATGCTCAAACCGACTGACACAACAGGTTCCGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCGAAAACGTTGAGGATTGATGACTTAGGAGAAGCGGAAAAAAGCTCTATATTGACAACTCTTGGGATTAAAAACAATAAGGTGGACTCGATCCGTGGGGGAGGACTTTTCAAAGCCTTTTCTTCAAAGAGTGATGAAAAAGATAGCGTGCAAAACTCATCTGCCTTGCAGGCCAATCCAGCAGCAATGTCTAGGTCAATTAGCTTCCATGAGACCTCATAA 1449 0.4562 MLEAKDPAIKLFGKTIPVPEISAGSGDSTGAPASPSGDAVDDGIIQNHASSMDEEEREIDEDTMEEEPADCKKEKDEALTQSLEKTANLDTASRLVKESIIPSTKDEQKTKEQAENSQDKTLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNSASHFRQITVPETAVQNSQSDSPNGVHHPSLNCNGTIFTFRTDTPLCESMESALNLADKGVNISLKNGFNRPEELRVHVPSVGEEKSDDHSNKSSDASTTPTEDAAANNTLEQVMPNCQSFPSQVPYYPGAPWLLPWNQVQPPPAFFPQGFAMPLYPPPAYWGFTMPSAWNNPWLAQPSSPNSAAVNSGPNSPTLGKHSREESMLKPTDTTGSDEGNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIKNNKVDSIRGGGLFKAFSSKSDEKDSVQNSSALQANPAAMSRSISFHETS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g4639 482 Coils Coil 45 65 - -
Mal6g4639 482 MobiDBLite consensus disorder prediction 66 81 - -
Mal6g4639 482 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 481 - -
Mal6g4639 482 PANTHER CYCLIC DOF FACTOR 2 1 481 IPR045174 GO:0003700|GO:0006355
Mal6g4639 482 MobiDBLite consensus disorder prediction 361 381 - -
Mal6g4639 482 Pfam Dof domain, zinc finger 126 183 IPR003851 GO:0003677|GO:0006355
Mal6g4639 482 MobiDBLite consensus disorder prediction 264 286 - -
Mal6g4639 482 MobiDBLite consensus disorder prediction 455 482 - -
Mal6g4639 482 MobiDBLite consensus disorder prediction 100 124 - -
Mal6g4639 482 MobiDBLite consensus disorder prediction 361 405 - -
Mal6g4639 482 ProSitePatterns Zinc finger Dof-type signature. 131 167 IPR003851 GO:0003677|GO:0006355
Mal6g4639 482 MobiDBLite consensus disorder prediction 382 405 - -
Mal6g4639 482 ProSiteProfiles Zinc finger Dof-type profile. 129 183 IPR003851 GO:0003677|GO:0006355
Mal6g4639 482 MobiDBLite consensus disorder prediction 451 482 - -
Mal6g4639 482 MobiDBLite consensus disorder prediction 14 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g4639 Mal-Chr6 130548014 130550547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g4639 6 482 C2C2-Dof Transcription Factor Family AT5G39660 41.199 2.05e-100 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal6g4639 zf-Dof 8.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g4639 - - aprc:113862693 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g4639 6 130548014 130550547 Mal2g4235 2 78737156 78740561 ECH
Mal6g4639 6 130548014 130550547 Mal6g4639 6 130548014 130550547 ECH
Mal3g0189 3 6964072 6966857 Mal6g4639 6 130548014 130550547 ECH
Mal6g2118 6 49154117 49156100 Mal6g4639 6 130548014 130550547 ECH