Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2118 ATGATTAATGATTCAACCACAAAGCTTTTTGGGAGAACAATTTTTCTAACACACAACACTGATGTATCTACAAATGATTCTTCCTCAGAGTTTTCTCCTCGTCTTGCTCATGATGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTCAAACAAAACATGAAGCAAAGAGATATAAGGAACTATCAAGTAAAGAACTCACCTCAATACAAGATGATGATGAGGTCTCACAACAAACCACAGAGGATTTAAACACTCCCTCATCTAAAATTGATGAACAAAGTGATATGTCACAAGACAAATCTCTTGAGAAACCAGACAAAATTGTTCCATGTCCACGATGCAAAAGTATGGACACAAAATTTTGTTACTACAACAACTACAATGTCAAACAGCCCCGACACTTCTGCAAAAACTGCCAGAGATATTGGACTTCCGGAGGAACCACAAGAACTATGCTTGTAGGCGCAGGTCGCCGCAAGAACAAAATCCCTTCTTTTTCTTCCGATGTATCGCATCATCGTCAAATGAATACTGTATTGACCTTTGGATCAGATTCTCCTATTATGTCTTCAACTAATTCACTTGACCAAAAAAAGAATGTAGGGTCACATGAAGAAACAACTGATAAGAGTTATCAAAGTTTTCGTCCTCCACAGTTTCCATGGAACCCTTCAATGTGCTATCCTGTGTCATTCTGTCCCAATATAGCATACTATGGTGGTTGTTTGGTACCATCTTGGAGTGTACAATCTATCTCACCACAATCTTGTAGTCCAAGTAAACCTACTTTAGGGAAACATTCAAGAGATGGAAAAATTCTCTTTCATTCCAACTCAGACAAAGAAAATCTTGGCTTAGAAAATAAGAAATCAAAAAGTAACAATAGTGTGTTGATTCCTAAGACACTGAGAATTGATGACCCTAATGAAGTTGCAAAGAGTTCTATGTGGTCAACACTAGGAATCAAGAATGGTGGAGGACTTTTCATGGGACTTGCATCTAAGGGTGTTGACAACAATCATGTGGTTGAAGCATCCTCATCACTATTTCAAGCCAACCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGGATCTGA 1134 0.381 MINDSTTKLFGRTIFLTHNTDVSTNDSSSEFSPRLAHDDFSDHSLHSSLSSSSPLEVNSQTKHEAKRYKELSSKELTSIQDDDEVSQQTTEDLNTPSSKIDEQSDMSQDKSLEKPDKIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGTTRTMLVGAGRRKNKIPSFSSDVSHHRQMNTVLTFGSDSPIMSSTNSLDQKKNVGSHEETTDKSYQSFRPPQFPWNPSMCYPVSFCPNIAYYGGCLVPSWSVQSISPQSCSPSKPTLGKHSRDGKILFHSNSDKENLGLENKKSKSNNSVLIPKTLRIDDPNEVAKSSMWSTLGIKNGGGLFMGLASKGVDNNHVVEASSSLFQANPAALSRSLVFHERI* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2118 377 MobiDBLite consensus disorder prediction 60 81 - -
Mal6g2118 377 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
Mal6g2118 377 PANTHER CYCLIC DOF FACTOR 1 200 376 - -
Mal6g2118 377 PANTHER CYCLIC DOF FACTOR 1 2 199 - -
Mal6g2118 377 PANTHER CYCLIC DOF FACTOR 2 2 199 IPR045174 GO:0003700|GO:0006355
Mal6g2118 377 MobiDBLite consensus disorder prediction 42 118 - -
Mal6g2118 377 PANTHER CYCLIC DOF FACTOR 2 200 376 IPR045174 GO:0003700|GO:0006355
Mal6g2118 377 MobiDBLite consensus disorder prediction 45 59 - -
Mal6g2118 377 Pfam Dof domain, zinc finger 116 172 IPR003851 GO:0003677|GO:0006355
Mal6g2118 377 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
Mal6g2118 377 MobiDBLite consensus disorder prediction 201 225 - -
Mal6g2118 377 MobiDBLite consensus disorder prediction 103 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2118 Mal-Chr6 49154117 49156100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2118 2 375 C2C2-Dof Transcription Factor Family AT5G39660 35.076 3.02e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal6g2118 zf-Dof 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2118 - - mtr:MTR_5g041530 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2118 6 49154117 49156100 Mal6g2118 6 49154117 49156100 ECH
Mal6g2118 6 49154117 49156100 Mal2g4235 2 78737156 78740561 ECH
Mal6g2118 6 49154117 49156100 Mal3g0189 3 6964072 6966857 ECH
Mal6g2118 6 49154117 49156100 Mal6g4639 6 130548014 130550547 ECH