Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2056 ATGGAGGAGAGAGTGTGTAAGTATTGTAACAAAAGGTTTCCTTGTGGAAAATCTCTTGGTGGTCACATTAGGACTCATATGATGAATGAAAATTCACTTCAATCTAATGAAGAGAAAAGAATGAATGCTAATGCTAGTGTTAATGCTATGTTTAAGTTTGATGAGGGAAGAAAGAGAAAGAGATTGGATTTAGGGTCTAATAGTAGTGGTGGTGATGATGGTAGTAACCTTATTTATGGTCTTAGAGAGAATCCCAAGAAAACATCAAGGTTTGTGCATTCCAATGCTGCTGCTACTGTTCAAATGGAGAAATTTTGCAAAGAATGTGGAAAAGGTTTTCCATCATTGAAAGCTTTGTGTGGTCACATGGCTTGTCACTCTGAGAAAGATAAGGGAGCTAATCGGATTGAAGGTGTGTCTGGTGTCCGCGAGAAGCAGAAATTGGTTATGGATAGTCAGTCTGATACCGAGACCTCGGTTCAGACTGATTCAAGGAGATCAAAGAGGATGAAGTTCAAGAATTTTAGTGGCGGCGGTGGCGATAACAAGTCTTCTTCTTCAATTCATTGGGGAAATTGTTCCTCTTCGATTTCCGAGGTTGAGCCGGAGCAAGAAGATGTTGCTAGGTGTTTGATGTTGCTGTCTAAAGATTCTACTTTCAAGGGTAGGTTTCCTTTGGTGACAGAGTCTTCTGATAACAACTCAGTTGTTCTTGAAGCAATTTCACCTTCTGTTGATACAAAGTTTGCTGCTATGAATCATGGTAAGAACATTGTTGGTGCTAAAAACAATACTATTAACCTTGCAGAGAAGAAGCTGAACAAGGATGGGAAGATGAAATCGGTCGAAATTGGTTATGTTTCTGATAATTCTGATTCTGGATACTTCACATATGGTCCTAAAAAAGTAGAATCAGATGATTCAAGTGATGGCTTTTTCAGGAATGATGCTAAGTTTTCTGGATTTGAGGATCATGAGTTTGAATCAAGTAAGAAGATAATGAGCAGAGGAAGAAACAGAAACAGAAACAGTACTGAATTCAATAAGCTTGTTTTAGATGATTCAAGGAAGAAACCAAATTATGATGTTTCTGGCAAAATTTTAGTTGAAAGTTCTAACAGAAAAAAGACAAAAAATGGTTATTGCAATGATGAAGTGTATGAAAATTTGAAGATTGATAGAGAGAGTTTCTCTGATGATTCAGCTTATGAGAGTGATGAAAATAGCTCAGATAGTGATTCTTATCCTGCTCCAAAAGCACAAAGCGGTAGAAACATGAATGGAAAGACTAATAAGAAGTCAAGTTGCAAAGGAAAGAAGAAAATGAAGTCAAAGAAAAGCAAAGAACATGAATGTCCAATTTGCAACAAGATTTTTAAGTCAGGACAAGCTTTAGGAGGTCACAAAAGGTCCCATTTTATTGGAGGAAATGATGATAACACTCTTGTGATTAGAGCAGCTGCTGCTGCTCATGCTGCTGCTGCTGCTCCTGCACCTCCTGCTGCTGTTGCTAATCCTTCTTTATTTGATCTTAATCTACCTGCTCCTGATGATGAATGA 1560 0.3782 MEERVCKYCNKRFPCGKSLGGHIRTHMMNENSLQSNEEKRMNANASVNAMFKFDEGRKRKRLDLGSNSSGGDDGSNLIYGLRENPKKTSRFVHSNAAATVQMEKFCKECGKGFPSLKALCGHMACHSEKDKGANRIEGVSGVREKQKLVMDSQSDTETSVQTDSRRSKRMKFKNFSGGGGDNKSSSSIHWGNCSSSISEVEPEQEDVARCLMLLSKDSTFKGRFPLVTESSDNNSVVLEAISPSVDTKFAAMNHGKNIVGAKNNTINLAEKKLNKDGKMKSVEIGYVSDNSDSGYFTYGPKKVESDDSSDGFFRNDAKFSGFEDHEFESSKKIMSRGRNRNRNSTEFNKLVLDDSRKKPNYDVSGKILVESSNRKKTKNGYCNDEVYENLKIDRESFSDDSAYESDENSSDSDSYPAPKAQSGRNMNGKTNKKSSCKGKKKMKSKKSKEHECPICNKIFKSGQALGGHKRSHFIGGNDDNTLVIRAAAAAHAAAAAPAPPAAVANPSLFDLNLPAPDDE* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2056 519 MobiDBLite consensus disorder prediction 399 450 - -
Mal6g2056 519 SUPERFAMILY beta-beta-alpha zinc fingers 105 472 IPR036236 -
Mal6g2056 519 Pfam C2H2-type zinc finger 5 27 - -
Mal6g2056 519 Pfam C2H2-type zinc finger 106 128 - -
Mal6g2056 519 Pfam C2H2-type zinc finger 450 472 - -
Mal6g2056 519 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 519 - -
Mal6g2056 519 Gene3D Classic Zinc Finger 91 165 - -
Mal6g2056 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Mal6g2056 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 450 472 IPR013087 -
Mal6g2056 519 MobiDBLite consensus disorder prediction 178 194 - -
Mal6g2056 519 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 519 - -
Mal6g2056 519 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Mal6g2056 519 MobiDBLite consensus disorder prediction 408 432 - -
Mal6g2056 519 SMART c2h2final6 104 126 IPR013087 -
Mal6g2056 519 SMART c2h2final6 450 472 IPR013087 -
Mal6g2056 519 SMART c2h2final6 4 26 IPR013087 -
Mal6g2056 519 ProSitePatterns Zinc finger C2H2 type domain signature. 452 472 IPR013087 -
Mal6g2056 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Mal6g2056 519 MobiDBLite consensus disorder prediction 147 194 - -
Mal6g2056 519 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2056 Mal-Chr6 47171792 47173351 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal6g2056 zf-C2H2_6 3.6e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2056 6 47171792 47173351 Mal6g2056 6 47171792 47173351 ECH