Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2022 ATGACACTATACATGCCATTATTCAGATCATGTTCAACTCTACGCCATCTCACACAACTCCACGCCCACCTCGTCGTTACTTCCCTTCACAACGACCCACTTGCTTCCACAAAGCTTCTCGAATCCTATTCCCAAATGGGTTCTCTTCAATCATCAAGACTCGTTTTTTACACTCACCCTTCACCTGATTCCTTCATGTTTGGTGTTCTCATCAAATGCCACCTTTGGAATCATCTTTTTCATCAAGTTCTTTCACTTTACAATCATCACATTCATACGGGTTCCAAATTGACCAATAGTTGCGCTTTTTTGTATCCTTCTGTTATTAGAGCTGTTTCTGGTGTTGGTGAGTTGGTTGTTGGAAGAAAGGTTCAGGGGAGGATTTTAAAATCTGGGTTTGGTGAGGATCGTGTTATTGGGACTTCGTTGGTTGGAATGTATGGGGAGTTAGGGTGTTTGAATGATGCGAAGAAGGTGTTTGATGAAATGTGTCAAAGAGATTTGGTTTTGTGGAGTTCGATTGTTTCGTGTTATGTTGAGAATGGGATTTATAGAGAAGGGTTGGAGATGTTTCGTTCGATGGTTTCTGAGGGGATTAGACCGGATTCTGTTACGTTGCTCAGTGTAGCGGAGGCTTGTGGTAAGATTGGTTGTTTGAGGTTGGCGAAATCGGTTCATGGGTATGTGATGAGAGAAGGGATGGTTGGTGATGGTAGTTTGAGTAGTTCTCTTATTGTTATGTATAGTCAGTGTGGTTATTTGTGTAGAGCGAAAAGGTTGTTTGAATGTCTTGATGATCGGAGTACTTCTTGTTGGACTTCTATGATTTCGTCATATAATCAAAATGGGTGCTTTGAAGAGGCATTGGATGCTTTTATTAAGATGCAAGATTCGGAGGTAGAACCGAATGATGTGACAATGATTAGTGTTTTGAATTCCTGCGCTAGATTAGGTCGGTTAAAAGAGGGAAAATCGGTTCATTGTTTTGTTTTAAGGAATGCACTGGGTGTTGCTGGTCTTGATCTTGGGCCTGCACTAATAGATTTCTATGCAGCATGCTGGAAAATATGTAGTTGTGAAAAGCTTCTTCATTTATTAGGAAACAAAAACATTGTATTGTGGAATACACTCATATCATTTTATGCCCGAGAGGGTTTAAATGATGAAGCCATGGCACTCTTTGCGCGTATGGTGGCAAAGGAGCTAATGCCAGACTCATTTAGCTTAGCAAGTTCAATTTCAGCAAGTGCAAGTTCTGGTTCAATACAATTTGGACAGCAGATACATGGTCATGTCGTGAAAAGAGGCTTCGTTGATGAATTTGTTCCAAACTCTTTGATGGATATGTATTCAAAATGTGGCTTTGTGGATTCGGCATACACAATTTTTAACAAGATCAAGCAGAAAAGCATTGTGGCATGGAACTGTATGATTTGTGGATTTTCTCAGAATGGCTTTTCATTAGAAGCACTCAACCTATTTGATGAGATGTTCAAAAATCGCCTCGAGATTAACGAAGTAACTTTTTTAAGTGCAATTCAAGCTTGCTCCAATTTGGGTTATCTTGACAAGGGAAAATGGATTCACCATAAGATCATCCTAACTGGTAATCAGAACGATCTTTATATCGATACAGCTTTGGTAGACATGTATGCGAAGTGTGGAGGCCTTCAAACAGCCCGAAGAGTTTTCGATAGCATACATGAGAAAAGTGTTGTGTCGTGGAGTACCATGATCGCAGCTCATGGCATACATGGTCAAATAAATGCTGCTATCTCACTCTTCAATAAAATGGTTCACTCAAACATCAAACCGAATGAAGTAACCTTCATGAATATCTTATCCGCCTGTAGGCACGCCGGATCCGTCAAGGAAGGTAAATTTTATTTCAACTCTATGAGGGATTATGGCATAGTGCCTAACGTAGAACATTTTGCCTCCATAGTTGACCTTCTAAGCCGTGCCGGCGATATCAACGGAGCATATGAAATAATTAAATCGATACGCACGCCTGTAGATGCTAGCATATGGGGAGCTTTACTTAACGGTTGTCGAATACACGGGAGGACGGACATGATTGAGTACATCGGGGAAGAGCTCGGAGGAATAAGTACAAATGATACAGGGTACTATACTTTGTTATCTAACATATATGCTGAAGGAGGAAAGTGGTTTGAATCAAGAAAAATGAGATCGAAGATGGAAGGAATGGGGCTGAAGAAGGTCCCTGGGTATAGTGCAATTGAGATAGATAGGAAAATCTATAGATTTGGAGCTGGAGATACTTCTGAATGGCAAATGAAAGAAATTTACATGTTTTTAGAAAATTTTCAAAGCTTGGCACAGGAACAAGGATGTGATGTAGAATACCATATGTATAATAATACTAGAGCTGGTATGTTTGTTGATGATTTTAGTGTTTATAACTTGCAGAGAGAAGCAAGCAGTCACATTGTGAATAAATCAGTCCTACTTTAG 2478 0.3995 MTLYMPLFRSCSTLRHLTQLHAHLVVTSLHNDPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFGVLIKCHLWNHLFHQVLSLYNHHIHTGSKLTNSCAFLYPSVIRAVSGVGELVVGRKVQGRILKSGFGEDRVIGTSLVGMYGELGCLNDAKKVFDEMCQRDLVLWSSIVSCYVENGIYREGLEMFRSMVSEGIRPDSVTLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSSSLIVMYSQCGYLCRAKRLFECLDDRSTSCWTSMISSYNQNGCFEEALDAFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNALGVAGLDLGPALIDFYAACWKICSCEKLLHLLGNKNIVLWNTLISFYAREGLNDEAMALFARMVAKELMPDSFSLASSISASASSGSIQFGQQIHGHVVKRGFVDEFVPNSLMDMYSKCGFVDSAYTIFNKIKQKSIVAWNCMICGFSQNGFSLEALNLFDEMFKNRLEINEVTFLSAIQACSNLGYLDKGKWIHHKIILTGNQNDLYIDTALVDMYAKCGGLQTARRVFDSIHEKSVVSWSTMIAAHGIHGQINAAISLFNKMVHSNIKPNEVTFMNILSACRHAGSVKEGKFYFNSMRDYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVDASIWGALLNGCRIHGRTDMIEYIGEELGGISTNDTGYYTLLSNIYAEGGKWFESRKMRSKMEGMGLKKVPGYSAIEIDRKIYRFGAGDTSEWQMKEIYMFLENFQSLAQEQGCDVEYHMYNNTRAGMFVDDFSVYNLQREASSHIVNKSVLL* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2022 825 Pfam PPR repeat 141 167 IPR002885 -
Mal6g2022 825 Pfam PPR repeat 169 199 IPR002885 -
Mal6g2022 825 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 272 404 - -
Mal6g2022 825 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 274 - -
Mal6g2022 825 Gene3D Tetratricopeptide repeat domain 544 753 IPR011990 GO:0005515
Mal6g2022 825 Pfam E motif 699 749 IPR046848 -
Mal6g2022 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Mal6g2022 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Mal6g2022 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Mal6g2022 825 Gene3D Tetratricopeptide repeat domain 220 336 IPR011990 GO:0005515
Mal6g2022 825 Gene3D Tetratricopeptide repeat domain 344 438 IPR011990 GO:0005515
Mal6g2022 825 Gene3D Tetratricopeptide repeat domain 92 219 IPR011990 GO:0005515
Mal6g2022 825 Gene3D Tetratricopeptide repeat domain 439 526 IPR011990 GO:0005515
Mal6g2022 825 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 400 776 - -
Mal6g2022 825 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 272 404 - -
Mal6g2022 825 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 274 - -
Mal6g2022 825 Pfam PPR repeat family 469 517 IPR002885 -
Mal6g2022 825 Pfam PPR repeat family 369 408 IPR002885 -
Mal6g2022 825 Pfam PPR repeat family 570 617 IPR002885 -
Mal6g2022 825 Pfam PPR repeat family 268 316 IPR002885 -
Mal6g2022 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Mal6g2022 825 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 400 776 - -
Mal6g2022 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Mal6g2022 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Mal6g2022 825 TIGRFAM PPR: pentatricopeptide repeat domain 573 607 IPR002885 -
Mal6g2022 825 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Mal6g2022 825 TIGRFAM PPR: pentatricopeptide repeat domain 141 170 IPR002885 -
Mal6g2022 825 TIGRFAM PPR: pentatricopeptide repeat domain 472 505 IPR002885 -
Mal6g2022 825 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Mal6g2022 825 TIGRFAM PPR: pentatricopeptide repeat domain 169 203 IPR002885 -
Mal6g2022 825 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2022 Mal-Chr6 45792882 45795359 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2022 6 45792882 45795359 Mal6g2022 6 45792882 45795359 ECH