Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3538 ATGCCGTCTTCAGATTCCGGTGAGAGCCTCCGATCAACCAAACCACAAAGCCGCCCCGGAGCACCAGCACCGGAGCCAGAGAATCTCCCATGTCCCCGATGTGATTCAACCAACACCAAGTTCTGTTACTACAACAACTACAACTACTCTCAGCCACGTCATTTCTGCAAAGCTTGCCGCCGTTACTGGACTAAGGGTGGAACCCTCCGTGACATCCCTGTCGGTGGAGGTAATCGAAAAAATGCTAAACGCTCCCGTACTCAGCATGTTGCTGTTACCTCATCCTCTTCTTCCTCCGCTGTGACTTCTGCACCGGAGCACCACCACTATCAAACAATGACACCCATCTCCGCCGTCCAAGGAGGAGGGTCTTTTCCGTTTGGTGGTGGTGTTGACAGTGACGGAGTCGGAAAACAGAATATGAGTGTTTGTGGAAGCTTTACTTCTTTGCTGAACAACAACAATCAAGGCTCTGGGTTTCTGGCATTAGGTGGATTTGGGCTTGGGCTTGGACATGGGCTTGAAGAAATGGGCTTTGGAATTGGGAGAACTGGTTGGGCTTTTCCAGGAATGGTGGATGGATCCAACATTGGTGTACCTGTTGTCTCTTCTGGTGTTGGAAACACGTGGCAGTTCGAAGGTGGTGAAGGTGGTTTTGTTGGTGCTAATGATTGTTTCTCTTGGCCTGGACTTGCAATTTCAACCCCTGGCAATGGTCTCAAATGA 726 0.5028 MPSSDSGESLRSTKPQSRPGAPAPEPENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTKGGTLRDIPVGGGNRKNAKRSRTQHVAVTSSSSSSAVTSAPEHHHYQTMTPISAVQGGGSFPFGGGVDSDGVGKQNMSVCGSFTSLLNNNNQGSGFLALGGFGLGLGHGLEEMGFGIGRTGWAFPGMVDGSNIGVPVVSSGVGNTWQFEGGEGGFVGANDCFSWPGLAISTPGNGLK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3538 241 MobiDBLite consensus disorder prediction 1 30 - -
Mal5g3538 241 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Mal5g3538 241 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 238 IPR045174 GO:0003700|GO:0006355
Mal5g3538 241 Pfam Dof domain, zinc finger 28 83 IPR003851 GO:0003677|GO:0006355
Mal5g3538 241 MobiDBLite consensus disorder prediction 1 16 - -
Mal5g3538 241 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 238 - -
Mal5g3538 241 MobiDBLite consensus disorder prediction 87 102 - -
Mal5g3538 241 MobiDBLite consensus disorder prediction 72 102 - -
Mal5g3538 241 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3538 Mal-Chr5 101187750 101188475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3538 1 241 C2C2-Dof Transcription Factor Family AT3G50410 47.148 4.15e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal5g3538 zf-Dof 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3538 - - cam:101488684 363.614