Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3312 ATGAAGGAACTAGTTGACAAGCACAGCGGTCATATGTATTTGACATCTCAAAAGGGCTATTTGCTTGCAACTTCCACAAATGATCCTCTACTTACAAATTCGACAAAGAAACCTAAGCTTAAAATGGCTGTTGACTGTGATAATGAAGTAATAAGAGAGGGAGCGACGTGGCTAAAGAAAACCTATGGGAACAATTTCCCACCAAGTCATGAGGTTCATGTAGAGAATGCCAAGCTAGGTCACCAGCAATATTACATTGACTCATTTTTCCTGAACTTGAAGAGGCTTCCATTGGTGGGTGTAATAATCATACCAAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTTAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTAATCAGTCACCTGGAAGCAAGAAGGAAGGCGGAGAAATCAAGCAACTATAAAAGCCAATTTCTTGCAAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATCGGATTACTTGACATTCTTTTGTCCGATGACTGTCTCACTAATGAACAATGTGCAACCGTTACTCAAATAAGAAAATGCTCAACTGCATTGCTCCGTTTACTCAATAACATCTTGGATCTAAGTAAGGTGGAATCTGGAAAACTTGTTCTAGAAGATGCAGAATTTGACTTGGGAAGAGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAGTGTAGAAATTATTTTAGACCTTTCTGATGATATGCCAAAGCTAGTTCGGGGAGATTCTGCGAGAGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATCAAATTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTATGGTGATAGTGAAAATTTTACTCTGGAGCAGAAGCAATTCGGATGTTCCCCGAAGACCAGAATAAAGCATTCAAAGAAGACTTCTAATAGTGATAACAAAATGATACTTTGGTTTGAAGTTGAAGACACAGGCTGTGGTATTGACCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGACCTATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGATTGTCAAAAAGGAAGGCCCAGGAACACTAATGCGATTATACCTGAGGCTCACCGCACCCGTAGATGCCACAGAACAACATTGTCAAGTCGATTTTGCTAACAATAACTTAGTGGTACTTCTTGCACTACATGGCAACATGAGCAGATTAATTACATCTAAGTGGTTACAGAAAAACGGCGTGGTCACTATGGAAGCATCTGAATGGAATGGACTAACACAAGTTCTAAAAGAACTATTTCATGCAAAAACTTCAACTCATAACAATGACTTAGATGCACACTTTCCAGCTCATGAGGGTCTGAATTCTAAATTTATTAGCATACAGGAACTGACAAACCCAACATTTGTTATTGTTGTTGATATCGATCTACTAGACTTGAGCACAGATATATGGAAGGAGCAACTTAACTTCCTTCACAAGTACTACACAAGAGCAAAATTCGTATGGTTACAAAACCATGACTCGTCCAATACCGTAAAGGCGGAGCTTCGCAAGAAAGGACATATACTAACTGTCAACAAACCTCTTTACAAAGCAAAGATGATTCATATTTTGGAAGATGTCATAAACGAAAGAAATGTTGAGGTAAAAAAGAAAAATATGAAAGATGATGATTTGCATGAGAGTCTTGAGATTGACTATACTCATCATTGTGATGTTGCAAGCTCAGATGGTTCTGACATATCTGAAATTGGTAGTTCTAATCTTGTTACTTCCAATGGAGACAAACAAAGAGAAGAGGTAGTTAGATTCAATCCGTCATCGATATACCAGAAAAGTAACAGCTTATTAGGATTAACTAATGAATATATGGAACATAATAGTCCTAGGAAAGAAGCATTTATTTCAACAAGAGCAAAAGTTGAATATTCTGAATGTGGTAGGGTCAGTGGTTCAAGTAAAGCTGTGAATGGAAAGAAGTCTCTTGAAGGTTTGAGGATATTGCTTGCAGAAGATACAGCAGTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCACTGTTGTTGCTGTAGGTGATGGACAACAGGCAGTGGATGCTCTAAATGGCTTGCTTGGTGTTGAAGATTGTATAAAGGAAAGAAACACAAGAACATCTCAAACTGAGATTCTAAGTTTCCCTTCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACTAAAGAAATAAGGAAATCAGAAATTGGAAATGCACTTCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTTTGGAAGTAGGCATGGATGCTTATTTAACTAAGCCAATTGACTTTAAACTGATGGAATCTACCATTCTTTCACTCACAAAGAGGGAAACCTTGACATCTTAA 2631 0.3805 MKELVDKHSGHMYLTSQKGYLLATSTNDPLLTNSTKKPKLKMAVDCDNEVIREGATWLKKTYGNNFPPSHEVHVENAKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMNLRAELISHLEARRKAEKSSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDCLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHSVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSYGDSENFTLEQKQFGCSPKTRIKHSKKTSNSDNKMILWFEVEDTGCGIDPSKWDSVFESFEQADLSTTRLHGGTGLGLCIVRSLVNKMGGEIKIVKKEGPGTLMRLYLRLTAPVDATEQHCQVDFANNNLVVLLALHGNMSRLITSKWLQKNGVVTMEASEWNGLTQVLKELFHAKTSTHNNDLDAHFPAHEGLNSKFISIQELTNPTFVIVVDIDLLDLSTDIWKEQLNFLHKYYTRAKFVWLQNHDSSNTVKAELRKKGHILTVNKPLYKAKMIHILEDVINERNVEVKKKNMKDDDLHESLEIDYTHHCDVASSDGSDISEIGSSNLVTSNGDKQREEVVRFNPSSIYQKSNSLLGLTNEYMEHNSPRKEAFISTRAKVEYSECGRVSGSSKAVNGKKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGQQAVDALNGLLGVEDCIKERNTRTSQTEILSFPSYDLILMDCQMPKMDGYEATKEIRKSEIGNALHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTKRETLTS* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3312 876 SMART REC_2 727 865 IPR001789 GO:0000160
Mal5g3312 876 SMART HisKA_10 172 238 IPR003661 GO:0000155|GO:0007165
Mal5g3312 876 SUPERFAMILY CheY-like 725 871 IPR011006 -
Mal5g3312 876 Gene3D - 710 870 - -
Mal5g3312 876 ProSiteProfiles Response regulatory domain profile. 728 869 IPR001789 GO:0000160
Mal5g3312 876 SMART HKATPase_4 285 433 IPR003594 -
Mal5g3312 876 Pfam His Kinase A (phospho-acceptor) domain 173 238 IPR003661 GO:0000155|GO:0007165
Mal5g3312 876 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 159 239 IPR036097 GO:0000155|GO:0007165
Mal5g3312 876 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 227 430 IPR036890 -
Mal5g3312 876 CDD HisKA 173 234 IPR003661 GO:0000155|GO:0007165
Mal5g3312 876 PANTHER OSMOSENSOR HISTIDINE KINASE 1 870 - -
Mal5g3312 876 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 285 432 IPR003594 -
Mal5g3312 876 ProSiteProfiles Histidine kinase domain profile. 179 433 IPR005467 -
Mal5g3312 876 Gene3D - 240 435 IPR036890 -
Mal5g3312 876 CDD REC_hyHK_CKI1_RcsC-like 729 865 - -
Mal5g3312 876 Gene3D - 160 239 - -
Mal5g3312 876 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 870 - -
Mal5g3312 876 Pfam Response regulator receiver domain 729 862 IPR001789 GO:0000160
Mal5g3312 876 PRINTS Bacterial sensor protein C-terminal signature 358 372 IPR004358 GO:0016310|GO:0016772
Mal5g3312 876 PRINTS Bacterial sensor protein C-terminal signature 376 386 IPR004358 GO:0016310|GO:0016772
Mal5g3312 876 PRINTS Bacterial sensor protein C-terminal signature 393 411 IPR004358 GO:0016310|GO:0016772
Mal5g3312 876 PRINTS Bacterial sensor protein C-terminal signature 417 430 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3312 Mal-Chr5 96579173 96584052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3312 1 870 Histidine Kinase Gene Family AT2G17820 62.892 0.0 1089
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal5g3312 HATPase_c 7.2e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3312 - - gmx:100776856 1387.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1006 6 15024628 15031417 Mal5g3312 5 96579173 96584052 PCT