Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2953 ATGAGTCCACCAAATATCAAAAACACACAAGATCATGAAAACCAACAAGGTTCTTCTTCAGATACCAAAAAAACAGATCAACAAAAAGCTATAATAAAATGTCCAAGATGTGATTCTCCCAACACAAAATTCTGTTACTACAACAACTACAGTCTCACTCAACCAAGACATTTCTGCAAAACATGCAGAAGATATTGGACAAATGGTGGATCTTTGCGTAATGTTCCAATAGGTGGTGGTATTAGAAAGAAACAAAAACTCAAACACTCATCTTCACCTTCTCAAATCATTAACAAATACTCTTCTTCACCTTCACTTGATTTTCATCATCTTGGTGGGTTATTACCCTTACCTTTACCATTACCCTTTTCTTCATCAAAACCTTCTTTCTATAACCAATTCTCTTCTATTGGTGGAGTTTCAAATTCAATTTCAAACACTTGTGTTTCTAGTTCTACTACAAGTGCTTCAAGTTTCCAACTTGATCCAATGAGTTTAAATTTATACCCTTTTTCTAATTCAAATGGAAGTGGATTTATTAATGGTGGAAATGAAAATGCAATTCAAGGAATGAACTTTATGAATGTGAGTAGTACTAGTGCTAGTACTAGTCTTGCTTCTAGTATTGAATCATTGAGTTGTAGGAACCAGGATTTGCATTTGAAGCTTCAGCAGCAGAGATTAGCAACCATGTTTGAAGATAATAACAGGAAAGAGAGTGGAACTGTTTTGCTTTCTCAGGTTAGTATTGAAAAGCCTCAACCTATTTTGTTTCAGAATCTTGAGATTTCAAAGGCAGAGATGTTTCAAGTTGGTGGTGATTCAAGAAAAGAAGGTGCAAGTGAATGGTTCTTTGGTATGAATTCTTATTCATCAGTTATGGCTCCTACAACAACTACTGATCTTAGTGTTTGCATTAATGGTGATCATGATCAGAATGGAAACAACAACTGGATTAATAATAATGGTGTTCATGCTTGGGGTGATGTGCAGCAGCAGCAGCAGCAACCATATACTGCTTTGCCCTAG 1029 0.3557 MSPPNIKNTQDHENQQGSSSDTKKTDQQKAIIKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGIRKKQKLKHSSSPSQIINKYSSSPSLDFHHLGGLLPLPLPLPFSSSKPSFYNQFSSIGGVSNSISNTCVSSSTTSASSFQLDPMSLNLYPFSNSNGSGFINGGNENAIQGMNFMNVSSTSASTSLASSIESLSCRNQDLHLKLQQQRLATMFEDNNRKESGTVLLSQVSIEKPQPILFQNLEISKAEMFQVGGDSRKEGASEWFFGMNSYSSVMAPTTTTDLSVCINGDHDQNGNNNWINNNGVHAWGDVQQQQQQPYTALP* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2953 342 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
Mal5g2953 342 MobiDBLite consensus disorder prediction 1 25 - -
Mal5g2953 342 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Mal5g2953 342 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 18 333 - -
Mal5g2953 342 MobiDBLite consensus disorder prediction 1 27 - -
Mal5g2953 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 333 IPR045174 GO:0003700|GO:0006355
Mal5g2953 342 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2953 Mal-Chr5 87508412 87509440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2953 26 342 C2C2-Dof Transcription Factor Family AT5G65590 37.812 2.36e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal5g2953 zf-Dof 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2953 - - cam:101501747 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0014 6 209438 210478 Mal5g2953 5 87508412 87509440 PCT