Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2363 ATGGAATCTTCATGCTTTGGTTCTAATGAGGAAGTCTTGCTAAAGCAAAAATGGAAATCCACTACAGAAGAGACAACAGTCTCTAGTGGTGAAAATGGTTGCTTTGATTGCAATATTTGCTTGGAATCCGCAAATGATCCTGTGGTTACACTATGTGGTCACCTGTATTGCTGGCCATGCATATACAAGTGGCTTAATGTCCAAAGCTCTTCTGTTGAACCGGATAAGCAGCCGACATGCCCGGTTTGTAAATCCGTGATCTCCGATACTTCGTTAGTCCCACTTTACGGGCGAGGAATATCTAATTCAGAAACTGAAGCCAAGAAAATCCAGGTGGGTTTAGGTATACCTCATCGGCCACCTCCTTACAACTTGAATGCTATGTTAACTTCAAATCGCGCATCAAATTTACATCACGAGGAACAACTCCATCGGAACTATTTCCCGTCACAATCACGGCCGATTCATTATCAGCACTACATCCCTCACCTTCATGGAGGTAATGGTGCCAATGGATTACCTTATCTTGGTGGTGCCGCCATGACTAGTTTCTTCAATCCTGTGATGGGTTTGTTTGGGGAGATGGTGTCGACGAGGGTTTTTGGTGTCTCCGATGCAAATTTGTTTGCTTACCCTCACAATGGAAGTACCAGTCCTAGAATGAGGAGGCAGGAGATGCAGATTGACAAGTCTCTAAACAGAGTTTCTATCTTTCTTCTTTGTTGTTTCATTTTGTGTCTTCTCTTGTTTTGA 753 0.4329 MESSCFGSNEEVLLKQKWKSTTEETTVSSGENGCFDCNICLESANDPVVTLCGHLYCWPCIYKWLNVQSSSVEPDKQPTCPVCKSVISDTSLVPLYGRGISNSETEAKKIQVGLGIPHRPPPYNLNAMLTSNRASNLHHEEQLHRNYFPSQSRPIHYQHYIPHLHGGNGANGLPYLGGAAMTSFFNPVMGLFGEMVSTRVFGVSDANLFAYPHNGSTSPRMRRQEMQIDKSLNRVSIFLLCCFILCLLLF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2363 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mal5g2363 250 SMART ring_2 37 83 IPR001841 -
Mal5g2363 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 150 IPR013083 -
Mal5g2363 250 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Mal5g2363 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 6 250 - -
Mal5g2363 250 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Mal5g2363 250 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Mal5g2363 250 SUPERFAMILY RING/U-box 36 88 - -
Mal5g2363 250 CDD RING-HC_AtRMA_like 35 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2363 Mal-Chr5 62674553 62675305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2363 13 236 C3H Transcription Factor Family AT4G27470 50.439 5.69e-56 177