Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2121 ATGGAAAGAATGTTCCCTCCAAAGAAGCCCTCAACTATGATGAATTCACATGATAGACCCATGTGTGTTCAAGGTGATTCTGGCCTTGTCCTCACCACTGATCCAAAACCACGGCTTCGATGGACCGTCGAACTCCATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGATAAAGCCACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGACTTGGAAAGCAACCCCACAAGGAATTCAATGAGCAATCGATTAAGGATGGTATGAGAGTTTCGGCTTTTGAGCTGCAGCGAAATACTGGCACCTCGTCCTCTATGACTGGTCGCAACATGAACGAGATGCAAATGGAAGTGCACAGAAGATTGCATGAACAACTAGAGGTTCAAAAGCACCTTCAATTGAGGATTGAGGCTCAAGGAAAATACATGCAAAGTATATTGGAGAAAGCTTATCACACACTTGCAGGTGAAAACATGGAAGCTGCAGCTACAAATTTCAAGGGGGGTATCAATGGAACTCAAGGCATCCCTGACATGAAAGATTTTGTTTCTCCTCTTAATAATTTTCCTCATTTTCAAGATCTTAACATTTGTGGTAGTGATGATGAACAACTTGATCTTCATCACAACATAGAGAGGCCAACCCTTGATGGAATTATAATGCCTAATAATAGTAATAATAATGAAAATTTGTTTGTTGGAAAGAAAAGGACTAACCCTTTTAATGGAAGTGGAAAGAGTCCAATAATTTGGAATGATAATGATCTTAGGCTTCATGATTTGGGAACAACTTCGTCATGCATTAGTCCTGAAGATGTTCCAAATTTCAAAGGTGACTCATTGGATAGATGTGATGAAAGTGATCCTATTGTTGATATTTATGACACAAAAGTGAGTGAGAAGAAATTTGATGCATCTGTGAAGCTTGGAATAACATTACCTATGATCAATGCTGTGGCATCTGGTAGAAGCTCATCACCATTTGGTTGA 1044 0.4023 MERMFPPKKPSTMMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDGMRVSAFELQRNTGTSSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYHTLAGENMEAAATNFKGGINGTQGIPDMKDFVSPLNNFPHFQDLNICGSDDEQLDLHHNIERPTLDGIIMPNNSNNNENLFVGKKRTNPFNGSGKSPIIWNDNDLRLHDLGTTSSCISPEDVPNFKGDSLDRCDESDPIVDIYDTKVSEKKFDASVKLGITLPMINAVASGRSSSPFG* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2121 347 SUPERFAMILY Homeodomain-like 35 91 IPR009057 -
Mal5g2121 347 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Mal5g2121 347 Pfam Myb-like DNA-binding domain 39 87 IPR001005 -
Mal5g2121 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Mal5g2121 347 MobiDBLite consensus disorder prediction 1 20 - -
Mal5g2121 347 Pfam MYB-CC type transfactor, LHEQLE motif 132 170 IPR025756 -
Mal5g2121 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 287 IPR044848 GO:0003700
Mal5g2121 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 287 - -
Mal5g2121 347 Gene3D - 35 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2121 Mal-Chr5 50015415 50017922 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mal5g2121 Myb_DNA-binding 4.7e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2121 5 50015415 50017922 Mal5g2121 5 50015415 50017922 ECH
Mal4g2040 4 43815971 43818087 Mal5g2121 5 50015415 50017922 PCT