Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2117 ATGCTTGCTAATGGGGTAGTCATGGATCTAAATTGTTTCCTCAAGTTCATATTGGTAATGATAATATTTCTAGTAGGGTTTCTTGCTTGGTTGGAAAACAAAGTAGCAAACTCAAATGAAGTCAATAAACAAAGAGAGGAGGTGGTGGAAGTTAGTGATGAAATAAATTTATTATTTGAACAAGATGATGAGGAGAACAGACGAAGTGAATATTGTGTTTGCTCCTTTTGTGGCAAATTCAGAAACATAATCACCAGATGCTCACGATGCAAAAATGCTATATATTGCTCAAAAGCATGCCATATCATGCACTGGAGACTTTGGCATAGAGATGAATGCGTTGAGATAGAAGATCATGAGGAATCATCTTTTCATGGAGCTCAATGCTTTCTCTTGGAGCCTGGAAACGTAAACTCTAAGTACTCATTCAATGATGATGATGATGATGATGATGAGCATAAGTTATATGAGGGGGATGTTTTCTATATTGAAGGAGGAGAAAATAGTGTTGAGTCAATTAAAGAAACAGCAAGAGGGCTTCAACATGATGGTTGTGCAGTTTGTGGCATTCCATGCTCCAAAAAATGCTCAAGATGCAAAGCTATAAAATACTGTTCACAAACATGCCAACATTTTGATTGGAAATCAGGGCATAAGTTCCAATGTTGTGTTACAAAGACAAGTTCAACTCAAGAAGTGACAGCCAATCACCAATGGCTTGCCAATGGAAATGTGGTTATAATGCCTCCAAATCTAGATGAGGTGCCAGATAATGATCATTCATATGACCCTCTTTGCTTGGAATTTTATTCAGAAGAAAACGCCAACACTAAGGCTCTGATTCTAAGTTCTCAGGCAGCTAGCAACAAATTACAAGAGGTTGAAGAACAATTGAGAAATCTAAAAGAAGAATTGGAAATGACCAGAAGTGAAAATATAACACTGCAATCAAAGCTTAACTATTGGGAAATTAGGGCAAAGTATTCTGCTGATAGACTTTACAGTTTCAAGAAAGAAAATGAACACCAGTTAGTTATTTTGAAGCATGAAAATGAATTGATATCAAATGCTGAGAAACAAGCTCGTCAAATGGTTACTAATTTATCTCAGAGGCTTCACTGTTTGCAGATTGCAATGGAAACTGGAGTAGCAGAGAGAAAAAAACAAGAAGAGTTTATACATGTCCTGCAGAATGAATGTACCAAGTCTAAGAAAGAGTTTCACGAACAAAACAAGTATGTTGAAAAGCTTAGACAGAAGCTTGATAATGTACCTCAATTTCCAATGAGAATAGCTGATGAGACAAGACAAAATGCAATTTTGGCTGATGAGTCCAAGGCTGCATTTGTTGAGGTGTCCAAGACAATCAGTTTAAGCAGAAATCCAACCTTGACTAGTCAGAGTTGTACAATTTGCTTAAGCAATGAGAAGGACTTGGCATTTGGTTGTGGACACATGACTTGCAGAGAGTGTGGATCTAAAATTCGCAAGTGTCATATATGTCGAAAGAAAATCACTGATCGAATTAGGTTGTTCCCTGGCTGA 1545 0.3709 MLANGVVMDLNCFLKFILVMIIFLVGFLAWLENKVANSNEVNKQREEVVEVSDEINLLFEQDDEENRRSEYCVCSFCGKFRNIITRCSRCKNAIYCSKACHIMHWRLWHRDECVEIEDHEESSFHGAQCFLLEPGNVNSKYSFNDDDDDDDEHKLYEGDVFYIEGGENSVESIKETARGLQHDGCAVCGIPCSKKCSRCKAIKYCSQTCQHFDWKSGHKFQCCVTKTSSTQEVTANHQWLANGNVVIMPPNLDEVPDNDHSYDPLCLEFYSEENANTKALILSSQAASNKLQEVEEQLRNLKEELEMTRSENITLQSKLNYWEIRAKYSADRLYSFKKENEHQLVILKHENELISNAEKQARQMVTNLSQRLHCLQIAMETGVAERKKQEEFIHVLQNECTKSKKEFHEQNKYVEKLRQKLDNVPQFPMRIADETRQNAILADESKAAFVEVSKTISLSRNPTLTSQSCTICLSNEKDLAFGCGHMTCRECGSKIRKCHICRKKITDRIRLFPG* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2117 514 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 47 121 - -
Mal5g2117 514 ProSiteProfiles Zinc finger RING-type profile. 469 502 IPR001841 -
Mal5g2117 514 Coils Coil 41 61 - -
Mal5g2117 514 ProSiteProfiles Zinc finger MYND-type profile. 185 222 IPR002893 -
Mal5g2117 514 Coils Coil 347 367 - -
Mal5g2117 514 SUPERFAMILY HIT/MYND zinc finger-like 71 117 - -
Mal5g2117 514 Coils Coil 284 318 - -
Mal5g2117 514 Gene3D - 55 118 - -
Mal5g2117 514 Gene3D - 169 228 - -
Mal5g2117 514 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 184 402 - -
Mal5g2117 514 SUPERFAMILY RING/U-box 468 508 - -
Mal5g2117 514 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 47 121 - -
Mal5g2117 514 SUPERFAMILY HIT/MYND zinc finger-like 182 226 - -
Mal5g2117 514 Pfam MYND finger 74 113 IPR002893 -
Mal5g2117 514 Pfam MYND finger 185 222 IPR002893 -
Mal5g2117 514 ProSiteProfiles Zinc finger MYND-type profile. 74 113 IPR002893 -
Mal5g2117 514 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 184 402 - -
Mal5g2117 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 457 513 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2117 Mal-Chr5 49915343 49922856 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2117 162 222 Miscellaneous Gene Families AT4G31670 39.344 4.06e-09 57.4