Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2112 ATGCAAATTTTTGTGGCAACATCATTGGACCTTATTAATTGGCTTATTGGGTTGTTTGGTTCTGCTGAAAAGAAAGTACACATTTCTGATCATAGCAACAAAATTGATGATGAGTCTTGGTCAGTGTACATATTGTTGATTGTGATTGGTTTTGTGTTCTTCCACTTGTATCGATTGGGAGAAAACAAACAACTCAATTCCAATACCAATGAGATTGAAGAAGAGGAGCCGGAGCACCTCGTCGATGAATCAAACCGTGATTTTGTTCCGGATTGGCAGCTTAGTCCTGAGACTTCTGAGCACGATGGCGCGGCCGGAAGACAAATTCCGTGTGCATTTTGCGGCGATATAAGCACCACAAGATGCTCTCGCTGCAAGGTTGCTAGATATTGCTCAGCGGAATGCCAAATTGGGCATTGGAGGTCGTGGCATAGATATGAATGTGTGGAAATAGAGACTGAAGAAAATCAAGAAAGAGATGTTAATGGTCACAAAACACCTATGCTTGTGGAGGAGAAGAAGTATGATAATGAGAGTTTCCCAAATGAGTCCTTGAATTCAAATGTGGTAGTGGATGGATCATGTAGCAGTAGCACTAGCAATGATGTATACAACTCTCATATTGGCTGTGTTGAATGTGGTAACCCAAGTACCACCAGATGCTCACTATGCAAATCCGTCAAATACTGCTCTACAAAGTGCTTGATTACGAACTGGAGATGGCATAAATACAATTGCATTGCAGGGGATGTGAGTTCAGCTCCAACAGAAAGACCTGATAGAAATGTTAGAGTGCTCAAGCATTGTCATAAAGTGGAAGAGAGTATTCATCCATCTAGTCCTCTCTATTTGGAGCTTCATCCAGGAACCTCAAACTTCAAGTCTCCAGCTGAAGTATCACAGGTTACTACAAAGGAAAGTCATGTGCATAAAACTCAATGGGTGAAATACCTTGAAGATGAACTAGTCAAGTCTAGGAAAGAAATTTTCGCAATACAATCAGAGTGTGACGATTGGAAGAGGCGAGCAAATTTCGCTAGAGAGATGTTTCAAAGCTTCAAGCAAATATCTGAAAACCAATTGTCTGTGTTGAGAAATGAAAATGAGTCAATATCAAATGCTGAGAAGAAAGCTTGCAATGTAACTCATAGTTTAAATGAGAGGCTAAAGCTCTTGCAGGTTGCAGCACAAGAAAACTTTGCAGAGAAGAGAAGGTTAGAAGAACATATACAAATGGTAGAGAATGAATGTGCTAAGCTAAAGAAGGAACTACAAGAAGAACATAAACATGCGCAGTATCTTACACTAGAGTCTAACAAGAGTCATGAGACTGCACAAATTGCCATAAGAGAAGTTGAAGCGGTAAGACAAGAGCTTCTAGAAGAGCGTGAACATGTCCAACGAGTTAAAGAGAATTTCATTAGAGATGTTACATTCTCTGAATCAAGAGCTATTTCCGCTGAGGCAAAACTCAGCGATCTTCGGAGGAAGATCAAACTGACTCGTAAGGCATGCACTATCTGTTTGACCAATGAAAAGGACATGGCCTTTGGGTGTGGACACATGACATGTAGAGATTGTGGATCCAAATTATCAAAGTGTCCAATATGCCGTGAGCAGATCACAAGTCATATTAAGTTGTTTCCTGGGTGA 1653 0.4059 MQIFVATSLDLINWLIGLFGSAEKKVHISDHSNKIDDESWSVYILLIVIGFVFFHLYRLGENKQLNSNTNEIEEEEPEHLVDESNRDFVPDWQLSPETSEHDGAAGRQIPCAFCGDISTTRCSRCKVARYCSAECQIGHWRSWHRYECVEIETEENQERDVNGHKTPMLVEEKKYDNESFPNESLNSNVVVDGSCSSSTSNDVYNSHIGCVECGNPSTTRCSLCKSVKYCSTKCLITNWRWHKYNCIAGDVSSAPTERPDRNVRVLKHCHKVEESIHPSSPLYLELHPGTSNFKSPAEVSQVTTKESHVHKTQWVKYLEDELVKSRKEIFAIQSECDDWKRRANFAREMFQSFKQISENQLSVLRNENESISNAEKKACNVTHSLNERLKLLQVAAQENFAEKRRLEEHIQMVENECAKLKKELQEEHKHAQYLTLESNKSHETAQIAIREVEAVRQELLEEREHVQRVKENFIRDVTFSESRAISAEAKLSDLRRKIKLTRKACTICLTNEKDMAFGCGHMTCRDCGSKLSKCPICREQITSHIKLFPG* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2112 550 ProSiteProfiles Zinc finger MYND-type profile. 210 246 IPR002893 -
Mal5g2112 550 Coils Coil 484 504 - -
Mal5g2112 550 PANTHER COPINE FAMILY PROTEIN 1 20 548 - -
Mal5g2112 550 ProSitePatterns Zinc finger MYND-type signature. 111 148 IPR002893 -
Mal5g2112 550 Pfam MYND finger 210 246 IPR002893 -
Mal5g2112 550 Pfam MYND finger 111 148 IPR002893 -
Mal5g2112 550 ProSiteProfiles Zinc finger MYND-type profile. 111 148 IPR002893 -
Mal5g2112 550 Coils Coil 354 374 - -
Mal5g2112 550 Coils Coil 396 430 - -
Mal5g2112 550 SMART ring_2 505 537 IPR001841 -
Mal5g2112 550 SUPERFAMILY HIT/MYND zinc finger-like 109 150 - -
Mal5g2112 550 Pfam Zinc finger, C3HC4 type (RING finger) 502 543 - -
Mal5g2112 550 PANTHER PROTEIN, PUTATIVE-RELATED 20 548 - -
Mal5g2112 550 SUPERFAMILY RING/U-box 504 544 - -
Mal5g2112 550 ProSiteProfiles Zinc finger RING-type profile. 505 538 IPR001841 -
Mal5g2112 550 Gene3D - 99 156 - -
Mal5g2112 550 Gene3D - 196 249 - -
Mal5g2112 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 549 IPR013083 -
Mal5g2112 550 Coils Coil 442 476 - -
Mal5g2112 550 SUPERFAMILY HIT/MYND zinc finger-like 206 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2112 Mal-Chr5 49839942 49846331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2112 111 148 Miscellaneous Gene Families AT4G31670 57.895 5.18e-08 53.9