Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2111 ATGGGAAACTCACAAGCGAAAAAGCGTGACGCTCCATTTCCCGGAACCACATCAACCATAAACAGAGCCCTCACACCGCGATCTCAACAACAAGTGTCTAACAACAATATTCATAATCCTTCTGGGAAGCTCTCTACCAAGGAGAAATATGCTTTGATTCCTGATAACTTCACTTCTCTTCAACAGGTTACAGATGCCTTGAGGAATGAAGGTTTAGAATCTTCAAATCTTATCCTTGGAATCGATTTTACGAAGAGCAATGAATGGACTGGCAAAAACTCATTTAATAATAGAAGCCTGCATGCTATTGGAGATACACCTAACCCCTATGAGAAAGCCATTTCTATTATTGGAAAGACTTTGGCTCCTTTTGATGACGACAATTTGATTCCATGTCTTGGCTTTGGTGATGCAACGACTCATGATCAAGAAGTGTTTAGCTTTCATGCCGATGATTCATCTTGCCATGGATTTGAGGAAGTTTTGGCTTGTTATCAAAAAATTGTTCCAAACTTGAGTCTTTCAGGACCAACTTCATATGCTCCGGTGATCGAGGCAGCAATAGACATAGTTGAGAAAACTCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTTACAAGCTATGGCAACAATGATGATGGAAAACTCAGTCCTCAAGAAGAGAGGACAATAAAAGCAATCGTTGATGCAAGTTCATATCCTCTTTCCATTGTTCTGGTTGGAGTTGGTGATGGGCCTTGGGAAGATATGAAAAAGTTCGATGACAAGTTACCTGCACGCGATTTCGACAATTTTCAGTTTGTTAACTTCACCGGCATTATGTCGAAGAAAATAAGCCCGTCTGCGAAAGAAGCTGCTTTTGCTTTGGCTGCTCTTATGGAGATACCTATCCAATATAAAGCAGCCCTTGAGCTCGGATTACTTGGTCGTGCAACGGGAAGGGCAAAGAAAATGGTTCCAAGACCTCCTCCAGCTCCTTATTCACGACCTGTGCCACCAGATCATTTTCTGAGAAACATGCCAACATCATCCATGGATGACGAGCGAAACCAATTGGAATGTGCTATATGTCTGACCAATAGAAAGGATTTGGCCTTTGGATGTGGTCACATGACCTGCAGAGATTGTGGGTCAAGAATAAGCAATTGTCCGATATGCCGCCAAAGGATCACTAATCGTCTAAGAGTGTTTACTGGATGA 1212 0.4224 MGNSQAKKRDAPFPGTTSTINRALTPRSQQQVSNNNIHNPSGKLSTKEKYALIPDNFTSLQQVTDALRNEGLESSNLILGIDFTKSNEWTGKNSFNNRSLHAIGDTPNPYEKAISIIGKTLAPFDDDNLIPCLGFGDATTHDQEVFSFHADDSSCHGFEEVLACYQKIVPNLSLSGPTSYAPVIEAAIDIVEKTHGQFHVLVIVADGQVTSYGNNDDGKLSPQEERTIKAIVDASSYPLSIVLVGVGDGPWEDMKKFDDKLPARDFDNFQFVNFTGIMSKKISPSAKEAAFALAALMEIPIQYKAALELGLLGRATGRAKKMVPRPPPAPYSRPVPPDHFLRNMPTSSMDDERNQLECAICLTNRKDLAFGCGHMTCRDCGSRISNCPICRQRITNRLRVFTG* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2111 403 ProSiteProfiles Zinc finger RING-type profile. 358 391 IPR001841 -
Mal5g2111 403 MobiDBLite consensus disorder prediction 1 43 - -
Mal5g2111 403 SUPERFAMILY vWA-like 75 257 IPR036465 -
Mal5g2111 403 CDD RING-HC_RGLG_plant 357 401 IPR045317 GO:0061630|GO:0070534
Mal5g2111 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 27 401 - -
Mal5g2111 403 SUPERFAMILY RING/U-box 352 397 - -
Mal5g2111 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 402 IPR013083 -
Mal5g2111 403 MobiDBLite consensus disorder prediction 320 339 - -
Mal5g2111 403 PANTHER COPINE FAMILY PROTEIN 1 27 401 - -
Mal5g2111 403 SMART ring_2 358 390 IPR001841 -
Mal5g2111 403 Pfam Zinc finger, C3HC4 type (RING finger) 355 395 - -
Mal5g2111 403 SMART VWA_4 74 277 IPR002035 -
Mal5g2111 403 Pfam Copine 99 312 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2111 Mal-Chr5 49832912 49837897 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2111 5 49832912 49837897 Mal5g2111 5 49832912 49837897 ECH
Mal4g2055 4 45420346 45424882 Mal5g2111 5 49832912 49837897 PCT