Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1988 ATGCATAATCCAAAATCCGCAGCGTCTTTCCTTATAGCACGCGCAAAGAACTCTCTTCAACTTCGTCACCACAACAATTATCGTTTTCTCACTTCAATTTCACCGTTACTCTTATTCTCCACGCGCTTAACTTCACCGTTTATCTCCACGCGCTTTTTCTCTGGATATTATAATCTTGAACAGTTCTCTGATGATGATTATGAATGTGAATTCGAGAATCACCAGGCATCGTCCACAGTGGCCAATGTGGATGAGTGGAAATGGAAACTCAGTATGCTGTTACGGAACGAAAAGGATCAGGAGATTGTATCTAGAGACAAAAGAGATAGGAGAGATTATGAACAAATCGCTAACCTTGCCAAAAGAATGGGACTTTACAGTGAGCTGTTTGGAAAAGTAGTTGTCGCAAGCAAGGTACCTCTTCCTAACTACCGACCAGATTTGGATGACAAACGTCCACAAAGAGAGGTTGTGATTCCACTAAGTTTGCAAAGGAGGGTGGAGGGTTTGGTGCAGGAGTACCTTGATAGACTACAATTAAATTCTCCAAAGACAACTGACTCTCTGGATAATGTGAATTCTACCAATCAGGTTAGAGATATAGACATGGATGAAAATGCCAATTCTTTTGTGGACGAATCTGTTATGGAAAAGGTTCTCCAGAAGAGGAGTTTGAGGATGCGTAATATGCAAAGATCATGGCAGGAATCACCTGAAGGCAAGAAGATGCTGGAATTCCGGAAGTCACTACCAGCATTTAGGGAGAAGGAGGGCTTACTTCAAGCTATAGCACGTAATCAGGTAATAGTTATATCTGGAGAGACCGGCTGTGGTAAAACTACTCAACTTCCTCAATATATATTAGAGTCCGAGATAGAGTCCGGCCGTGGGGCATTTTGCAGCATTATTTGCACACAACCTCGAAGGATATCTGCTATGTCAGTGGCTGAGAGAGTTTCAGCAGAGAGAGGAGAGTCTCTGGGAGAAACAGTTGGTTTCAAAGTTCGGTTAGAAGGAATGAGAGGGAAAAACACCCATCTGCTATTTTGTACCAGTGGTATATTACTCCGAAGGTTGCTGAGTGATCGGAACCTGAGTGGTATAACCCACGTGTTTGTGGACGAAATTCACGAGCGAGGCATGAATGAAGACTTCTTACTGATTGTGTTGAAGGATCTTCTTCCACGTCGTCGTGATTTAAGATTGGTATTGATGAGTGCCACTTTGAATGCTGAACTTTTTTCAAATTATTTTGGAGGTGCACCGACATTTCATATCCCGGGTTTCACCTATCCTGTAAGAGCTCACTTCTTAGAAGATGTTTTGGAAATGACTGGATATAAGTTGAGTTCTTTCAACCAAGTTGATGATTATGGTCAAGATAAATTGTGGAAAACACAAAAGCAGCTTGCACCACGGAAGAGGAAAAACCAGATTACTGCTCTTGTTGAGGATTCCCTTTCTAAATCAAGCTTTGAGAACTATAGTCCCAAGACACGCGACTCATTATCTTCTTGGGCACCTGACTGCATAGGATTTAATCTCATTGAAGCTGTTCTATGCCATATATGTCGTAAGGAACGGCCAGGTGCCGTCTTAGTATTTATGACTGGGTGGGAGGATATAAGCTGTTTAAGAGATCAGCTTAAAGCACATCCTCTTATAGGAGATCCCAATAGGGTTCTGCTTCAGACATGCCATGGTTCAATGGCAACTTCTGAACAGAAACTCATATTTGATAAACCACCTCCAAATGTAAGGAAAATAGTACTTGCTACAAATATGGCAGAGGCAAGTATTACGATCAATGACGTAGTTTTTGTCATAGACTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAACACACCATGTCTACTACCTTCTTGGATTTCACAAGCATCTGCGCGGCAGAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGCTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAATACCAACTTCCTGAACTTTTGAGAACACCCTTGAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATTGGAGAATTCCTATCATCAGCTTTGCAGGCACCAAAGCCACGTACCGTCCAAAATGCTATTGATTTTCTCACGATGATTGGAGCATTAGATGAAAAAGAAAATCTTACTAATCTTGGGAAGTTTCTCTCGATACTTCCTGTAGATCCCAAGCTGGGAAAAATGCTGATAATGGGAGCTATATTTCGGTGCTTTGATCCTGTTCTTACAATAGTTGCTGGCCTTAGTGTCAGGGATCCTTTCCTTCTACCCCAAGACAAAAAAGATTTAGCAGGGACTGCAAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCTGAAAGAGAAGGATCAGCTTATGAATACTGCTGGAGAAATTTTCTCTCTGCCCAAACTCTTCAGGCAATTCATTCACTTCGGAAACAGTTCAGCTTCATCTTGAAAGAAGCTGGCTTGGTAGATACAGATGCAAGCATTAATAACAAATTCAGTCATAATCAATCTCTTGTACGTGCTGTCATATGTTCTGGACTCTTTCCTGGGATAGCATCAGTTGTGCACAGAGAGACATCCATGTCATTTAAGACTATGGACGATGGCCAGGTTTTATTATATGCAAATTCGGTGAATGCACGGTACCAGACTATTCCTTACCCATGGTTGGTTTTTGGTGAGAAAGTAAAGGTCAATGCTGTTTTCATCCGTGATTCTACTGGTGTATCTGATTCAATACTTATCCTATTTGGCGGTGCTCTAAGTAATGGGATACAGGCCGGGCATCTGAAAATGTTAGATGGATATGTTGATTTCTTTCTGGATCCTAATTTAGCTGACTGCTATTTGAAGCTTAAGGACGAACTTGATAAGCTTATCCAAAAGAAGCTAGAAGATCCTGGCATTGACATTCACAAGGAAGGAAAATACTTGATGCTTGCTGTTCAGGAATTGGTTTCAGGGGATCAGTGTGAAGGAAGATTTGTATTTGGTCGTGACAGCCGGAAGCCTAAGGCCTCTAATGACGAGAGTAAATTCACAAAAGATGGGACAAACCCCAAGAGCTTGCTGCAAACACTTTTAATGCGAGCAGGGCACTCTGCACCAAAATACAAAACAAAACATCTTAAGACAAATGAGTTCAGGGCATTGGTAGAGTTTAAAGGAATGCAATTTGTTGGCAAACCGAAAAGGAATAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTAACTCACACCTCTGACAATGCTCAGCATGAGGACGATAAATCTCCTCCTGATGTCACTGACAACATGTTAAAACTTCTAGGGAAGCGTAGAAAATCAAAACGAAATTTTGATTGA 3447 0.416 MHNPKSAASFLIARAKNSLQLRHHNNYRFLTSISPLLLFSTRLTSPFISTRFFSGYYNLEQFSDDDYECEFENHQASSTVANVDEWKWKLSMLLRNEKDQEIVSRDKRDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEYLDRLQLNSPKTTDSLDNVNSTNQVRDIDMDENANSFVDESVMEKVLQKRSLRMRNMQRSWQESPEGKKMLEFRKSLPAFREKEGLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRISAMSVAERVSAERGESLGETVGFKVRLEGMRGKNTHLLFCTSGILLRRLLSDRNLSGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDVLEMTGYKLSSFNQVDDYGQDKLWKTQKQLAPRKRKNQITALVEDSLSKSSFENYSPKTRDSLSSWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLIGDPNRVLLQTCHGSMATSEQKLIFDKPPPNVRKIVLATNMAEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSSALQAPKPRTVQNAIDFLTMIGALDEKENLTNLGKFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDTDASINNKFSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFLDPNLADCYLKLKDELDKLIQKKLEDPGIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRDSRKPKASNDESKFTKDGTNPKSLLQTLLMRAGHSAPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNAQHEDDKSPPDVTDNMLKLLGKRRKSKRNFD* 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1988 1148 Gene3D - 510 668 IPR027417 -
Mal5g1988 1148 PANTHER ATP-DEPENDENT RNA HELICASE 64 1042 - -
Mal5g1988 1148 CDD DEXHc_RHA-like 266 426 - -
Mal5g1988 1148 MobiDBLite consensus disorder prediction 1028 1045 - -
Mal5g1988 1148 Gene3D - 691 792 - -
Mal5g1988 1148 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 515 689 IPR001650 -
Mal5g1988 1148 Pfam Helicase associated domain (HA2) 712 785 IPR007502 GO:0004386
Mal5g1988 1148 SMART ha2_5 711 802 IPR007502 GO:0004386
Mal5g1988 1148 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 427 IPR014001 -
Mal5g1988 1148 Pfam DEAD/DEAH box helicase 261 411 IPR011545 GO:0003676|GO:0005524
Mal5g1988 1148 Pfam Double-stranded RNA binding motif 1049 1111 IPR014720 -
Mal5g1988 1148 Gene3D - 1029 1116 - -
Mal5g1988 1148 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 868 949 IPR011709 -
Mal5g1988 1148 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 64 1042 - -
Mal5g1988 1148 MobiDBLite consensus disorder prediction 1028 1048 - -
Mal5g1988 1148 CDD SF2_C_RHA 504 657 - -
Mal5g1988 1148 SMART DRBM_3 1049 1112 IPR014720 -
Mal5g1988 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 810 IPR027417 -
Mal5g1988 1148 SUPERFAMILY dsRNA-binding domain-like 1041 1125 - -
Mal5g1988 1148 MobiDBLite consensus disorder prediction 1116 1137 - -
Mal5g1988 1148 SMART helicmild6 543 649 IPR001650 -
Mal5g1988 1148 Pfam Helicase conserved C-terminal domain 518 648 IPR001650 -
Mal5g1988 1148 MobiDBLite consensus disorder prediction 1115 1148 - -
Mal5g1988 1148 SMART ultradead3 248 441 IPR014001 -
Mal5g1988 1148 Gene3D - 198 428 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1988 Mal-Chr5 43727669 43741878 Dispersed/Proximal