Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1899 ATGATGAGGCGGATTAAAAAGGAGATTGAGGATGAGATGCTCTACGATGATCAGACTGGGTCAGAGTTGAATGATGAGGGTTATGCTGGAAGTTCCCGTGGGGCTGCTCTGAAGAAAGGGCCATGGACATCTGCTGAAGATGATATTTTGGTCGATTATGTCAAGAAGAACGGAGAGGGGAACTGGAATGCTGTTCAGAAGCAGACAGGCCTGCTACGTTGCGGAAAAAGTTGTCGATTGCGGTGGGCTAATCATCTAAGGCCAAATTTAAAGAAAGGGACATTTACTGCAGAAGAGGAGCAGTTGATTTGTGAGCTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCAGCGCATTTGCCTGGTCGTACAGATAACGAGATAAAGAACTATTGGAACACTCGGGTCAAGAGGCGTCACCGGGCAGGCTTACCACTTTATCCTCCTGAAGTATTGCAACGGACTCTTCATGGCCAAAGCACTGGTGGAATTAACAGTGGCAATGAAGTGCATCCCGAATTCTTGCAGAAAAAGGGTTTTGATATACATGATGCAATATACGACTGTCTGAAGGATAACCAGGGAATATTACCTTATGTGCCTGAGCTTCCTGATATTTCTGCTTATGGTCATATGCTAAATGGATTTGATTCTTCTCAGTATTATAGTTTTGTGCCATCGACATCATCTAACCACAAACGTTTTCGAGAGTCAACAATACCATTTCTTGATTTCAGTTGCATTGACAGAAATGGTTATTATCCATTTGATCATATTCAGGATGATACTTTTGATAAGTTGACACAATCATTTGGTATGCAATCACCCCTTGATCCTGGTCCCTCTTCTCACAGCTCAATGTGTTACAGCCATTCACTTAAAAATGGCAATTCCTCTACTTCTAAGCCTTTTGAGGCTGTGAAGCCGGAGCTCCCTTCACTCCAAAATCCAGAAATTGATTTTGGTAGCTGGGGTACATCTCCCCCACCTCCTTTACTTGAGTCAATTGATGATTTCATTCAGTCTCCTACACCAATTAGTACAGTAGAGTCAGATTGTTCTTCACAAAATAGTGGCCTGCTGCAATCTGTACTTTATCAGCGGAAGACTCCGAGTAGTTCAAAAAACCAATATTATGACAAGAGTTCAAATTCATCTACTGCAACTCCTGGTGAAAGAGAAGAAAACTCTGCTTTGAACATGTATGAGACAGAATGGGAAGAGTATGCTGACCCTGCATCTCCGTTTGGCACATCTTCAATATTGAATGAGTGCCCTGCTGTTAGTGCCAACAGAAATTCACTGGATGAACAGCCACCTGTTTCGACTGTTAATGGCAACACTGTGAAATTAGAGTATGTTGACCAGGTTTGGGCTCCTGACAGTGAAAATCAAATCAAGTCTCTGTTGAATATTAGTTGGCCAGATTCCTTGCTTGCTTCAGATTGGTACGAGACGTATTCTGGGCCTGACCAGAACCGATTCATCACTGATGCTACATCGACGTTTCTCGAAGATCAATTAGCCTCCGACTATAAACATATAACTGCTGGAACTTCTAACCCAAGTCAGGTATGGGAGTTTGGTTCCTATGCGTGGAACAACATGCCTGCTGTCTGTCAAACATCTGATCTTGGTTAA 1644 0.4294 MMRRIKKEIEDEMLYDDQTGSELNDEGYAGSSRGAALKKGPWTSAEDDILVDYVKKNGEGNWNAVQKQTGLLRCGKSCRLRWANHLRPNLKKGTFTAEEEQLICELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRVKRRHRAGLPLYPPEVLQRTLHGQSTGGINSGNEVHPEFLQKKGFDIHDAIYDCLKDNQGILPYVPELPDISAYGHMLNGFDSSQYYSFVPSTSSNHKRFRESTIPFLDFSCIDRNGYYPFDHIQDDTFDKLTQSFGMQSPLDPGPSSHSSMCYSHSLKNGNSSTSKPFEAVKPELPSLQNPEIDFGSWGTSPPPPLLESIDDFIQSPTPISTVESDCSSQNSGLLQSVLYQRKTPSSSKNQYYDKSSNSSTATPGEREENSALNMYETEWEEYADPASPFGTSSILNECPAVSANRNSLDEQPPVSTVNGNTVKLEYVDQVWAPDSENQIKSLLNISWPDSLLASDWYETYSGPDQNRFITDATSTFLEDQLASDYKHITAGTSNPSQVWEFGSYAWNNMPAVCQTSDLG* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1899 547 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 2 543 - -
Mal5g1899 547 MobiDBLite consensus disorder prediction 372 395 - -
Mal5g1899 547 SMART sant 38 88 IPR001005 -
Mal5g1899 547 SMART sant 91 139 IPR001005 -
Mal5g1899 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Mal5g1899 547 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Mal5g1899 547 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Mal5g1899 547 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Mal5g1899 547 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Mal5g1899 547 Gene3D - 38 91 - -
Mal5g1899 547 MobiDBLite consensus disorder prediction 372 397 - -
Mal5g1899 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Mal5g1899 547 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 2 543 - -
Mal5g1899 547 MobiDBLite consensus disorder prediction 275 306 - -
Mal5g1899 547 Gene3D - 94 140 - -
Mal5g1899 547 SUPERFAMILY Homeodomain-like 37 133 IPR009057 -
Mal5g1899 547 MobiDBLite consensus disorder prediction 275 305 - -
Mal5g1899 547 CDD SANT 41 86 IPR001005 -
Mal5g1899 547 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1899 Mal-Chr5 40338374 40341164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1899 32 540 MYB Transcription Factor Family AT3G11440 43.470 2.71e-113 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g1899 Myb_DNA-binding 8.2e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g5314 2 126737572 126741318 Mal5g1899 5 40338374 40341164 PCT