LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g1885	ATGGTGTTTTTGTTTCCAACAGGAACAGCAATGATCATCTGGGTTCTTACAGTTATACTTGCTGTGATTCCATGGTACATGTTCAACAAATTTTGGCTTAAGCCAAAGAGGTTTGAAAAATTTCTCAAAGCTCAAGGTCTTCAAGGTGACCCATATAAGCTTTCACTATTTGTGGACAACTCCAAACATAATTATACGTTGAAGTTGCAACAAGAAGATAAATCTAAATCCATTGGTCTCACCAAAGAAGCCGCACCATCTATCTTCTCTCCTGTTCATCAAACTGTACACAAATATGGAAAGAAATCCTTTTTATGGGAAGGTACAACACCGAAGGTTGTCATCACAGATCCTGAGCAAATTAAGGAAGTCTTTAACAAGATTGAGGACTTCCCCAAACCAAAGTTAAGTTCTATTGCCAAGTATTTTAGCGTTGGTACAATACAGTATGAGGGTGAGAAATGGGCTAAACATCGAAAGATCGTTAATCCGGCATTCCACATAGAAAAATTGAAAGGTATGCTGCCTGCATTTTCTCACAGTTGCAATGAAATGATAAGCGAATGGAAGGGATTATTGTCAGCAGATGGAACATGTGAAGTTGACGTTTGGCCTTTCCTTCAGAATTTAACCTGTGATGTAATTTCTAGAACAGCGTTTGGAAGCAGCTATGCAGAAGGAACAAGACTATTTCAACTTCTGAAGACGCAGGGATTTCTTTTGATGACAGCACCACACACAAACAATCCATTAAGGCGGCTTCTGACAAAAACTACCAAGGGGAGGATGAAAGAAAGTGAAAGAGAAATCCATGATTTACTTGAGGGAATCATTCAAAAACGAGAAAAAGCGCTGAAGAATGATGAAACCACCAATGACGATTTATTAGGCATACTTCTGCAATCAAATCATGCCGAAAATCAAGGACATGGAAAACATAAGAGTATTGGAATGACCACCCAAGAAGTGATAGATGAATGCAAATTGTTTTACTTGGCGGGGCAAGAGACCACCTCAAGCTTGCTGGTTTGGACAATGGTGTTATTAGGCAGGTATCCTGAATGGCAAGCACATGCAAGGCAGGAAGTTTTGCAAGTTTTTGGGAACCAAAATCCAAACTTCGAAGGATTAAGTCGACTTAAAATTGTAACCATGATTTTGTACGAGGTACTTAGGTTATACCCACCTGTGGTTTACTTCAGCCGAGCTCTTCGAAAGAATTTGAAACTTGGAAACCTTTTGCTGCCAGCAGGAACACAAGTTTCCCTACCAATACTTTTGATTCACCAAGATAATGATATATGGGGTGATGATGCAAAGGAGTTCAAACCTGAAAGGTTTGCTGAAGGAATTGCTAAGGCAACAAAAGGAAAAGTTTGTTATTTCCCTTTTGGATGGGGTCCTAGAATTTGTCTTGGACAAAATTTTGCCTTATTAGAAGCAAAGATAGTGATAACATCATTGCTGCAGAATTTCTCATTTGAGCTTTCTCCTAATTATGTGCATGCTCCTACAACGGTGCTTACGTTTCAGCCAAAAAACGGGGCAAGCATCATTTTACATAAATTGTAA	1572	0.3912	MVFLFPTGTAMIIWVLTVILAVIPWYMFNKFWLKPKRFEKFLKAQGLQGDPYKLSLFVDNSKHNYTLKLQQEDKSKSIGLTKEAAPSIFSPVHQTVHKYGKKSFLWEGTTPKVVITDPEQIKEVFNKIEDFPKPKLSSIAKYFSVGTIQYEGEKWAKHRKIVNPAFHIEKLKGMLPAFSHSCNEMISEWKGLLSADGTCEVDVWPFLQNLTCDVISRTAFGSSYAEGTRLFQLLKTQGFLLMTAPHTNNPLRRLLTKTTKGRMKESEREIHDLLEGIIQKREKALKNDETTNDDLLGILLQSNHAENQGHGKHKSIGMTTQEVIDECKLFYLAGQETTSSLLVWTMVLLGRYPEWQAHARQEVLQVFGNQNPNFEGLSRLKIVTMILYEVLRLYPPVVYFSRALRKNLKLGNLLLPAGTQVSLPILLIHQDNDIWGDDAKEFKPERFAEGIAKATKGKVCYFPFGWGPRICLGQNFALLEAKIVITSLLQNFSFELSPNYVHAPTTVLTFQPKNGASIILHKL*	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g1885	523	SUPERFAMILY	Cytochrome P450	89	520	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	Pfam	Cytochrome P450	88	499	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	E-class P450 group I signature	210	228	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	E-class P450 group I signature	425	449	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	E-class P450 group I signature	322	339	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	E-class P450 group I signature	471	494	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	E-class P450 group I signature	96	115	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	E-class P450 group I signature	342	368	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	E-class P450 group I signature	461	471	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PANTHER	CYTOCHROME P450 FAMILY MEMBER	11	519	-	-
	Mal5g1885	523	Coils	Coil	263	283	-	-
	Mal5g1885	523	PANTHER	11-OXO-BETA-AMYRIN 30-OXIDASE-RELATED	11	519	-	-
	Mal5g1885	523	PRINTS	P450 superfamily signature	462	471	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	P450 superfamily signature	471	482	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	P450 superfamily signature	385	396	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	PRINTS	P450 superfamily signature	333	350	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal5g1885	523	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	464	473	IPR017972	GO:0005506\|GO:0016705
	Mal5g1885	523	Gene3D	Cytochrome P450	80	522	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g1885	Mal-Chr5	39822384	39825868	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g1885	16	523	Cytochrome P450	AT3G14690	52.047	0.0	545

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g1885	5	39822384	39825868	Mal5g1885	5	39822384	39825868	ECH