Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1880 ATGTTAACAACCTACTTTTATGGAACAGAATCTAACCACGCCACCTTAGGAAACAATAAGGGTTTTGCTGATGTTGTTTTTGGAAGCTATGATTGTCGTGGTGACATTGCGGATCAATTCTGTCGATTCTGTATCAATAGTGCTACCAAAGAAATTGCTCAACGTTGTCCTGATAGTGTGTCAGCTGTTATATGGTATGATCTATGCATCATTCGTTACTCGAACGAAAATTACTTCGGAAAAGTTATTGTAGCACCATCATGGAATGTTACTGGAACCAAAAGCATAAAGGACTCAACAGAACTTGGGAAAGCAGAAGATTTCATGAGGAGTTTGATAAGAAAAATGATAGAGGCGAATCGATCATGGGCAACGAGTGAGTTCATTTGGAGTGATACTGAGAAAAGATATGGATTGGTTCAGTGTTCTGGAGACCTTAATAATGATGGGTGCAGACAGTGTTTGGAGACCCTGTTGGACGAAATTCGCCTGTGTTGTGGGACTAAGGTAACATGGGCTGTTATAGCTCCAAGTTGTGGGATTAAATTTGATGATCAAATGTTCTATCAGTTAACAGGATCCTCTTCTCCTATGCCAAATCCAGCCAAGCATGGAGGAGAAAGTAACATCAAAATCTTGATCATCACGTTATCAAGTGTACTTGTGGCAGTAGTTTTTGTATGTTGTTGTGTCCACAGGAGATTAAGTAAAGGTACTTATAACAACTTACATACATCCGATCACGATCACGTTCAAAGTGATGATTCATTGAATGGAGACCTTCCAACAATCCCTTTAACAGTAATTCAACAAAGCACTAAATATTTCTCAGAGTCATCTAAATTAGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGTACTTTACCAGATGGGACAGAAATTGCGGTCAAAAGGCTTGCAGATACATCTAATCAAGGTTTAGAGGAGTTCAAGAATGAAGTAATATTCATAGCTAAGTTGCAACACAGGAACCTTGTGAAGCTATTAGGTTGCTGCATTGAAGAAAATGAAAAGATATTAGTATATGAGTACATGCCAAATTCAAGCCTTGACTTCCACCTTTTCAATGAAGAAAAACATAAGCAACTAGATTGGAAATTACAGCTAAGCATTGTCAATGGAATCGCAAGAGGACTACAATACCTTCATGAGGACTCTCGACTTAGAGTCATCCATAGAGATTTGAAAGCGAGCAACGTCCTTCTGGACAGTGAAATGAATCCAAAAATATCAGATTTTGGTTTGGCGAGAAAATTTGAAAGCGGCCGAATTCAGACAAAAACAAAAAGAGTTGTTGGTACCTACGGATACATGGCTCCAGAATATGCTATGGTTGGGTTATTTTCAGTTAAATCTGATGTTTATAGCTTTGGAGTTCTTATATTAGAAATCATTTATGGAAAAAGGAATGGTGAATTTTTTCTCTCAGAACACAGGCAAAGTCTTCTACTATATGTGAGTTTTGCTAAGCACATCTCATCAACATATGATTTTAAATGA 1521 0.3794 MLTTYFYGTESNHATLGNNKGFADVVFGSYDCRGDIADQFCRFCINSATKEIAQRCPDSVSAVIWYDLCIIRYSNENYFGKVIVAPSWNVTGTKSIKDSTELGKAEDFMRSLIRKMIEANRSWATSEFIWSDTEKRYGLVQCSGDLNNDGCRQCLETLLDEIRLCCGTKVTWAVIAPSCGIKFDDQMFYQLTGSSSPMPNPAKHGGESNIKILIITLSSVLVAVVFVCCCVHRRLSKGTYNNLHTSDHDHVQSDDSLNGDLPTIPLTVIQQSTKYFSESSKLGEGGFGPVYKGTLPDGTEIAVKRLADTSNQGLEEFKNEVIFIAKLQHRNLVKLLGCCIEENEKILVYEYMPNSSLDFHLFNEEKHKQLDWKLQLSIVNGIARGLQYLHEDSRLRVIHRDLKASNVLLDSEMNPKISDFGLARKFESGRIQTKTKRVVGTYGYMAPEYAMVGLFSVKSDVYSFGVLILEIIYGKRNGEFFLSEHRQSLLLYVSFAKHISSTYDFK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1880 506 ProSiteProfiles Gnk2-homologous domain profile. 83 188 IPR002902 -
Mal5g1880 506 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 492 - -
Mal5g1880 506 SUPERFAMILY Protein kinase-like (PK-like) 256 479 IPR011009 -
Mal5g1880 506 Pfam Salt stress response/antifungal 109 185 IPR002902 -
Mal5g1880 506 Pfam Salt stress response/antifungal 19 75 IPR002902 -
Mal5g1880 506 SMART serkin_6 276 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g1880 506 Gene3D Phosphorylase Kinase; domain 1 237 351 - -
Mal5g1880 506 CDD STKc_IRAK 282 476 - -
Mal5g1880 506 Gene3D Transferase(Phosphotransferase) domain 1 352 504 - -
Mal5g1880 506 Gene3D - 3 78 IPR038408 -
Mal5g1880 506 Gene3D - 88 188 IPR038408 -
Mal5g1880 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Mal5g1880 506 Pfam Protein tyrosine and serine/threonine kinase 279 475 IPR001245 GO:0004672|GO:0006468
Mal5g1880 506 PANTHER PROTEIN KINASE DOMAIN 7 492 - -
Mal5g1880 506 ProSiteProfiles Protein kinase domain profile. 276 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g1880 506 ProSiteProfiles Gnk2-homologous domain profile. 1 78 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1880 Mal-Chr5 39543013 39545745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1880 26 493 Receptor kinase-like Gene Family AT4G05200 43.648 3.40e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mal5g1880 PK_Tyr_Ser-Thr 2.6e-48 CL0016