Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1865 ATGATGAGATTTCTTCTTAGCTTCATGCTGCTCCTTTTCTTCCTCTCCACACCAACAAATTCACAAAATCCAATTTCATTGAACACTTTCTGCAACAACTCAACTAAAAAGCCTCTCACCACTTCATACAAAACCAACGTTAACAAAGTCCTCACATGGATGAACACTGTATCTTCAACAGGCTCAGAATCTAACCAAACTTCCATAGGAAGCAACAAGAACAATCATAATGATACAGTTTATGGAAACTACGATTGTCGCGGCGACATACCTGCACAGTTCTGTCATTTCTGTGTCAACAGTGCTGTCAAAGAAATTTCACAAAGTTGCACAAATGGTACCTCAGCTATGATATTCTATGACATGTGCATACTACGTTACTCTAACCAGAATTTCTTTGGAAAAATTATCTTATCTCCTTCATTTAATTTAACTGGACCAAAAGCCATAAAGGACTCAAGAGATTTTGCGAAAGCCGAGGGTTTGATGAAGAATTTGATAAGGAAGACTACGGATGCTAACAGAATGTGGGCGACGAGCGAGTTTGATTGGAGTGATACTGAGAAAAGATATGGTTTGGTTCAGTGTGCAGGAGATCTTGATAATAATGGATGTAAAGAGTGTTTGAAGGATTTGATAGAGAGAGTTGCTGAGTGTTGTTGGACAAAAGTTATGTGGGCTATTGTTGCTCCAAGTTGTGGGATTAGGTTTGATGATAATAAGTTTTTCCAGGTATCTTCTGAGCAATCAGGATCCTCTTCTTTGCCAAATTCAGGTAAGCAGGAAGGTTTAAGTAACAAAAAAACCTTGACCATCAGCTTAGTAAGTGTACTAATGGTAATAGCTCTACTAACTTGTTGTGTCTACTACTCATGGAGAAGGAATAGTAGGTTAAGTCAAGGTGAATTGACGTCGAGTACCATTCCTCTAGCTTTTCAAGATCATGTTCTAAGAAATGATTCATTGAATGGAGACCTTCCAATAATCCCTTTAATTGTACTTCAACAAAGCACTGATTACTTTTCAGAGTCATCTAAATTAGGAGAAGGTGGATTTGGTTCTGTTTACAAGGGTACTTTACCGGATGGGACCGAAATTGCGGCTAAAAGGCTTTCAAAAACGTCAGGTCAAGGTTTAGAAGAGTTCAAGAATGAAGTAATTTTCATAGCAAAACTACAGCATAGAAATCTTGTGAAACTCTTGGGCTGTTGCTTTGAACAAAATGAAAAGATACTAGTGTATGAGTACATGCCGAATTCAAGCCTTGACTTTCACCTTTTTAAATTGGAAAATAATAATCAACTAGATTGGAATTTACGACTAAACATTATCAACGGAATTGCAAGAGGACTGTTATATCTTCATGAGGATTCTCGACTTAGAGTTATCCATAGAGATTTGAAAGCAAGCAACGTTCTTTTGGACGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAAGGTTTGAAAAAGGTCAAAGTCAGACAGAAACAAAAAGAGTTATGGGAACCTACGGATACATGGCTCCAGAATATGCTATGGCTGGGTTATTTTCAGTGAAGTCTGATGTTTTTAGCTTTGGAGTGCTCGTATTGGAAATCATTTATGGAAAAAGGAATGGTGAATTCTTTCTTTCAGAACATAGGCAAACACTTCTCTTATATACTTGGAAACTATGGTGTGAAGGGAAAAGTTGGGAATTCGTTGATCCGATCCAAAGAAAATCATACATCGAAAATGAAGTTTTGAAGTGCGTACACATTGGTTTATTGTGTGTGCAAGAAGATGCTGCAGATCGACCAACCATGTCCACCATTGTTCTCATGCTAGGGAGTGACACGATGGTCCTTCCAAAACCGAAAAAACCAGCATTTTCAGTTGGAAGAATGTTCAATGATGAAGATTCAACTTCAAAAAGTTATAACGATAACTCGATTAACGAACTTACAGTAACCAGTTTTACACCTAGATAG 1980 0.3747 MMRFLLSFMLLLFFLSTPTNSQNPISLNTFCNNSTKKPLTTSYKTNVNKVLTWMNTVSSTGSESNQTSIGSNKNNHNDTVYGNYDCRGDIPAQFCHFCVNSAVKEISQSCTNGTSAMIFYDMCILRYSNQNFFGKIILSPSFNLTGPKAIKDSRDFAKAEGLMKNLIRKTTDANRMWATSEFDWSDTEKRYGLVQCAGDLDNNGCKECLKDLIERVAECCWTKVMWAIVAPSCGIRFDDNKFFQVSSEQSGSSSLPNSGKQEGLSNKKTLTISLVSVLMVIALLTCCVYYSWRRNSRLSQGELTSSTIPLAFQDHVLRNDSLNGDLPIIPLIVLQQSTDYFSESSKLGEGGFGSVYKGTLPDGTEIAAKRLSKTSGQGLEEFKNEVIFIAKLQHRNLVKLLGCCFEQNEKILVYEYMPNSSLDFHLFKLENNNQLDWNLRLNIINGIARGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARRFEKGQSQTETKRVMGTYGYMAPEYAMAGLFSVKSDVFSFGVLVLEIIYGKRNGEFFLSEHRQTLLLYTWKLWCEGKSWEFVDPIQRKSYIENEVLKCVHIGLLCVQEDAADRPTMSTIVLMLGSDTMVLPKPKKPAFSVGRMFNDEDSTSKSYNDNSINELTVTSFTPR* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1865 659 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Mal5g1865 659 CDD STKc_IRAK 347 612 - -
Mal5g1865 659 PANTHER PROTEIN KINASE DOMAIN 16 656 - -
Mal5g1865 659 Gene3D - 25 132 IPR038408 -
Mal5g1865 659 Gene3D - 145 242 IPR038408 -
Mal5g1865 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Mal5g1865 659 Gene3D Transferase(Phosphotransferase) domain 1 417 619 - -
Mal5g1865 659 ProSiteProfiles Gnk2-homologous domain profile. 25 132 IPR002902 -
Mal5g1865 659 SUPERFAMILY Protein kinase-like (PK-like) 325 628 IPR011009 -
Mal5g1865 659 ProSiteProfiles Protein kinase domain profile. 341 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g1865 659 Pfam Salt stress response/antifungal 160 239 IPR002902 -
Mal5g1865 659 Pfam Salt stress response/antifungal 31 130 IPR002902 -
Mal5g1865 659 Pfam Protein tyrosine and serine/threonine kinase 344 610 IPR001245 GO:0004672|GO:0006468
Mal5g1865 659 SMART serkin_6 341 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g1865 659 ProSiteProfiles Gnk2-homologous domain profile. 137 242 IPR002902 -
Mal5g1865 659 Gene3D Phosphorylase Kinase; domain 1 310 416 - -
Mal5g1865 659 Pfam Domain of unknown function (DUF3403) 614 659 IPR021820 GO:0004674
Mal5g1865 659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1865 Mal-Chr5 38686992 38690624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1865 6 659 Receptor kinase-like Gene Family AT4G05200 40.735 3.19e-168 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mal5g1865 PK_Tyr_Ser-Thr 2.2e-48 CL0016