LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g1859	ATGTCTCCATCAATGAAATCAAAATCCAAGTCGAAGGAAAAGGCTTCTGCAAAGGCTTCTAAGGAACAACAAAAGACTTCTCCAAAGACTTCTGGATCTAAAAATGATGAGAGCGGCATTCCTGCTAGTTCGTGCGATCTCGAAACATCATTGGTTGATTCTTCTTCCATAGTTAATGACAACAGCCAATTCGCCAAAATAAACGATACTGATGATCATTCTATTAGTCCTCAAGGAACGGTGTCCGAGTACGATTCAGTTTCTAATAATGGCAGTTGTTCTGGTGAATCAGAAGACACTAAAGAGAAAGCTGCAAACTCGTCGTCTACACGGTTGGATTTTATACCTGGTTGTGATAATGACAGAAGGGATAAGATCCGACTGAAGAATGAGAGGAAGCACCAGAGACAGAGGGAAAGGAGAGCTCATGAGTTGCATGAGCGATGCGTTACGTATCTAATGTCGAGGAAGCTAGAAAAACTTGTGCAGAAATTAGTGGCGATGGGATTCTCTTCCGAGCGAGCAACATTGGCTTTGAAGTTAAACAACGGGAAATTAGAAGAATCAATATCGTGGTTATTTGAAGGAGGTAGTGAAGCGGAAAATACTACCAACCTTGTAAGTGATGGTAATTTGAAGATTGACATAAGTGAAGAGCTTGAACAAATTTATCCTCTTGAAGTTAAGTACAATTGTTCAAAGCAAGAAGTCGAAAGAGTAGTTGTTGCCTGTGAAGGTGATCTTCAAAAGGCAGATCACACGTTAAAATCTCAGAAGGAAGAATCTCCTGTGAATCAGTCAGAAGATTCTGCTCAAAATAATAGTTCCACGAGATCTCATGGATTACAACCTTCTTCAGTATCAATACAGCAGAGAGGGAATGAAAGTGATTTCAACTATTACAACGTACGTGGTGCTGATTCTATGTTCCAAGATCCTGAAAATAGGAATCCACAGTCTCTACACTTGAATCATCATCAAAATGAATTGACACAGAAAAGATGGGGTGTTGGTACTACAGCATCAAATCCTTCTAATATGTTACAATCCATGCAAGCAATGTCACCATTTGTTAAAATGGAGGCGCAGCCGAGTGCCTTTAGGAACGATGGAAGAATGAATCATCAAGGAGTAGGAAGGGAGCCGGTAGTCATGATGCAGCATCCACAATTTGCCGATGCCAAACAAAATTATCTGAATTCTATGAATTCCTTGCCTTCCGGAACATCTGGTTGGTATGTAAATAATGTTCCTGCTTATGAAAATACAAGGTCGAATGGGAATTTACTACTACAAAATCATGGCATGGGAAATGTTGGCGCAGATCGCTTGCAGCAACTTTCTCAGGCTCCTTATAAAGAATATTCCCATGCATTTGGGCCAGTAGATTCTTCAATCTCATCAGGTGGAATGGGAGGTTTCTATAAACCGATGGTTGCATCGTTGCCTTCACCTACAATGCCTTCTCAGTCTCACCCTCAACATCATGGCTCATGGAACACCGCCGCATCTTCACCTGCACTTACAGTTCCACCTTCCCTCGGACTCTTTTGTGGTCATCAGAATCCATCGGCCAGATCATTCAGCTCACATTCACATGTGGATTGGAATACCGGGGGCATGGTGCAAGAATTCGACTACAACAATATAGATTGGAGTTTGGATTGCCCGTCGTCATCCAGATCAGGTGATGTTTGGCTAGGATTCTCATCGTCGTTGAGAAACAACACCGGTAATAGGATGGCCAGTTCTTACATGACTGGATCGCGAAATGTTGGCACGGCGAGGGAAATTCCGCCGTCAGCTGGATTGCGAGATTGGACCACACCTTTTGCTGGGAAAGACATATTCAGTGTTCCCAGGAAGTTTGTTAACTTTCCTCCTATGTAG	1890	0.4243	MSPSMKSKSKSKEKASAKASKEQQKTSPKTSGSKNDESGIPASSCDLETSLVDSSSIVNDNSQFAKINDTDDHSISPQGTVSEYDSVSNNGSCSGESEDTKEKAANSSSTRLDFIPGCDNDRRDKIRLKNERKHQRQRERRAHELHERCVTYLMSRKLEKLVQKLVAMGFSSERATLALKLNNGKLEESISWLFEGGSEAENTTNLVSDGNLKIDISEELEQIYPLEVKYNCSKQEVERVVVACEGDLQKADHTLKSQKEESPVNQSEDSAQNNSSTRSHGLQPSSVSIQQRGNESDFNYYNVRGADSMFQDPENRNPQSLHLNHHQNELTQKRWGVGTTASNPSNMLQSMQAMSPFVKMEAQPSAFRNDGRMNHQGVGREPVVMMQHPQFADAKQNYLNSMNSLPSGTSGWYVNNVPAYENTRSNGNLLLQNHGMGNVGADRLQQLSQAPYKEYSHAFGPVDSSISSGGMGGFYKPMVASLPSPTMPSQSHPQHHGSWNTAASSPALTVPPSLGLFCGHQNPSARSFSSHSHVDWNTGGMVQEFDYNNIDWSLDCPSSSRSGDVWLGFSSSLRNNTGNRMASSYMTGSRNVGTAREIPPSAGLRDWTTPFAGKDIFSVPRKFVNFPPM*	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g1859	629	PANTHER	DOMAIN PROTEIN, PUTATIVE-RELATED	1	629	-	-
	Mal5g1859	629	MobiDBLite	consensus disorder prediction	63	118	-	-
	Mal5g1859	629	SUPERFAMILY	UBA-like	159	203	IPR009060	GO:0005515
	Mal5g1859	629	MobiDBLite	consensus disorder prediction	1	47	-	-
	Mal5g1859	629	MobiDBLite	consensus disorder prediction	264	294	-	-
	Mal5g1859	629	MobiDBLite	consensus disorder prediction	484	504	-	-
	Mal5g1859	629	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	156	196	IPR015940	-
	Mal5g1859	629	PANTHER	UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEIN	1	629	-	-
	Mal5g1859	629	SMART	uba_6	158	195	IPR015940	-
	Mal5g1859	629	MobiDBLite	consensus disorder prediction	21	47	-	-
	Mal5g1859	629	MobiDBLite	consensus disorder prediction	63	95	-	-
	Mal5g1859	629	MobiDBLite	consensus disorder prediction	253	294	-	-
	Mal5g1859	629	Gene3D	-	121	208	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g1859	Mal-Chr5	38591993	38593882	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g1859	7	325	EF-hand Containing Proteins	AT5G12120	43.478	1.89e-68	232