Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1856 ATGAAGAAGAAGCTCGATACTCGTTTCCCTGCTGCTCGGATAAAGAAAATAATGCAAGCTGATGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTTTCCAAGGCTCTGGAGCTATTTCTGCAAGATCTTTGTGACCGGACTTATGAAATAACTCTTCAAAGAGGGGCAAAAACCATGAATTCATTGCATCTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAAGGATGTAGTCAGCAAGGTTCCTGACTACGGCCATGGTCATGGCCATACTGATGCTGGTGGTGCTGATGATCAGACCATTCCAAAAAGAAGGAAAGCTGCCGGTGATGATGGTAATGACAGTGATGAAGAAACTAAGAGAGGCAAGATGCTTGAGTTGAGCCACCCTAGCCCTACTGGTAGGGGAAGAGGCCGCGGTAGAGGAAGAGGACGTGGTCGAGGTCGTGGACGAGCTAGTCAAAGAGAGGGACATCATCAGGAGACTGAATCTGAGCCTTGTCCTTCTGTTCAGCAAGTTAGCCAACATTCTGCAGATACAAATGTGGCTACACTTGATGGCTCAGAGTCAAATGAGTTACCAAAGATGAATGTTGTTGTTGCTGCTGATAACTCCGACTCTCTCCTTAATATTGATCTGAATGCCAATATGAACGAAAATGATGACAAAAAGGCTAGCGCAGTTGCTAATCTCACAGCCGCCAATCCCGAAGCCGTTAATCCTGAAGCTGCTAATCCCCCTGTGTCGGAACCTCCTCCAACAGACAGCAGGCATCATGAAGAAATTCCAGGCTGGTCCCTTTCTGAGGTGGACAAGATGGCCATTGATTCGATGCAGCTTGCACAGCTTGGTACGCGGATGGATGAGGATGATGAAGATTATGATGAGGAAGGGTAA 915 0.4623 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSKVPDYGHGHGHTDAGGADDQTIPKRRKAAGDDGNDSDEETKRGKMLELSHPSPTGRGRGRGRGRGRGRGRGRASQREGHHQETESEPCPSVQQVSQHSADTNVATLDGSESNELPKMNVVVAADNSDSLLNIDLNANMNENDDKKASAVANLTAANPEAVNPEAANPPVSEPPPTDSRHHEEIPGWSLSEVDKMAIDSMQLAQLGTRMDEDDEDYDEEG* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1856 304 SUPERFAMILY Histone-fold 3 90 IPR009072 GO:0046982
Mal5g1856 304 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Mal5g1856 304 MobiDBLite consensus disorder prediction 155 169 - -
Mal5g1856 304 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 303 - -
Mal5g1856 304 MobiDBLite consensus disorder prediction 91 184 - -
Mal5g1856 304 MobiDBLite consensus disorder prediction 91 131 - -
Mal5g1856 304 MobiDBLite consensus disorder prediction 240 304 - -
Mal5g1856 304 MobiDBLite consensus disorder prediction 170 184 - -
Mal5g1856 304 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Mal5g1856 304 PANTHER HISTONE SUPERFAMILY PROTEIN 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1856 Mal-Chr5 38502027 38505742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1856 1 293 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.837 6.01e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mal5g1856 CBFD_NFYB_HMF 2.4e-19 CL0012