Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1814 ATGAGTCCTTCAGCTGAAACGGAGATGGAAGATGCTAAGTCGTCTGTTGTAGATGCTGATAATGGTGACCAAGCTGATTCTCGCTTTGCTGAGTTTTCAAAGAATGAGCTAGCACTGGATGAGAAAAGCTGTAAAGAAGCAATGGATCTGTTTAGAGAAACCAAACATCTTCTCATGGCAAATGTTTCATCAATGGGAAATGGAACGACAGAAGAAGCAGAGCGGTACTGGTTTGCTTTTATTTTATACTCTATCAAGAGACTGACTCAGAAAAATGAGGAGAGTGAGAAGGAAGAGAATGAGAATACTGGTCTTACCTTGTGTCGAATATTGAGAGCAGCTAAGCTTAACATTTCAGATTTTTTTAAAGAACTTCCTCAGTTTGTTGTCAAGGCTGGTCCAATTTTAAGTAATCTATATGGGTCGGATTGGGAAAACAAGCTTGAGGCGAAGGAGATGCAGGCCAACACTATTCACTTGAAGATTCTTAGCAAGTACTATAAGCGTGTATTTGAAGAGTTCTTTGTGTCAACTGATGCAAATGTTGAAAATAAGGCATCTGTTACCAACCGTGTATCTGAGTACCATCGTTTTGGATGGTTACTTTTCTTGGCGCTTCGTGTACATGCTTTCAGCCGTTTTAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCTATCATGGCTATCTTAATTATTCATGTTCCGGCTCGTTTTCGGAATTTCAACATTCACGACTCTTCTCGCTTCGTTAAGAAAAGCAGCAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACACATATAACACTTCAGAAGATGAGTTGAGGAAAACCATGGAGCAAGCCAATAAATTAGTAGCAGATATATTGAAGAAGACACCCTGTTTGGCATCTGAATGCAAAACTGAAAACCTAGAGAATTTTGATAAAGATGGTTTGACATATTTTAAAGATCTCATGGAGGAATCATCTCTGCCATCTAGTTTGAATATGTTAGAAAATGATTATGATCACATGACTCGCAACAAGGGTGATCTGGATGAAAGGTTATTCATTAATGAGGATGACAGCCTACTAGCTTCAGGAAGTTTGTCCGGAGGTTCTGTTTCAGCAGGAGGTGTCAAGAGGAAATTTGATTTGATGATGTCACCTGCCAAGACCATTACAAGTCCGCTTTCACCCCACCGCTCTCCTGCATCCCATGCTAATGGCATTCCGGGTAGCGCAAATTCAAAGATTGCTGCCACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTCCATCAAAGCCGTCACAAGAGCTAGAGCGATTCTTGACTTCATGTGACAGAGATATTACAAGTGAGGTAATACGCAGAGGACAGATTATATTGCAAGCTATATTTCCTAGTAGTCCCCTTGGGGACCGATGTGTGACTGGAAGCCTGCAAAGTGCTAACCTCATGGACAATATATGGGCCGAACAACGAAGATTGGAAGCCATGAAGTTATACTATAGGTTATTGGCAACAATGTGCCGAGCAGAGGCTCAAATACTTGGCAACAATTTAACTTCACTGCTCACTAATGAGAGGTTCCATAGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCTACTCACAAGACTGTGACAATGTTGTTCCCTGCTGTACTGGAGAGGACTGGAATTACAGCTTTTGATCTTAGCAAAGTGATCGAAAGTTTCATTAGATATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTTAATTCATTGGAGGAACGACTTTTAGAGAGCTTGGTATGGGAAAAAGGTTCTTCAATGTATAATTCATTAGCAGTCGCTAGACCTGCCCTTTCTGCAGAAATCAATCGACTTGGTATGTTAGCCGAACCAATGCCATCATTAGATGAAATCGCAATGCAGATTAACTTCTCTTGTGGTGGACTGCCTCCTGTCCCTTCCTTGCCTAAGCCTGAGGCTTTGCCTGTTCAAAATGGGGATATCAGATCACCAAAGCGGCTCTGTACAGAGAATCGAAATGTGTTAGTGGAACGAAATTCCTTTACTTCACCGGTGAAAGATCGGCTTCTTCACTTAAGCAACCTTAAATCAAAACTACTCCCACCTCCTTTGCAATCAGCATTTGCCAGTCCAACAAAGCCAAATCCAGGAGGTGGAGGAGAAACATGCGCAGAAACTGGGATCAGCGTATTTTTTAGCAAGATTGTTAAGTTGGGAGCAGTCAGAATAAGCGGAATGGTTGAAAGGCTGCAATTATCTCAGCAGATAAGGGAGAACGTGTACTGTCTTTTCCAGCGAATCCTAAATCAATGGACATCTCTCTTCTTCAACCGCCATATTGACCAAATCATTTTGTGTTGCTTCTATGGAGTTGCAAAGATTTCACAACTGAACCTAACTTTTAGGGAGATTATATACAACTACAGAAAGCAACCACAATGCAAGCCACAGGTTTTTCGTAGTGTATTTGTTGACTGGTCATCGGCACGCCGTAATGGGGGATCTAGACATAGAACAGGACAGGAGCACATCGATATCATTTCATTTTACAACGAAGTTTTCATTCCCTCTGTAAAGCCGCTTCTGGTTGAACTTGGCCCTGGTGGAGCAACTGTGAGAAGTGATCAAATACCTGAAGCTAACAACAAAAATGACGGCCATTTAGTTCAAAATCCTGGATCTCCTAGAATTTCACCTTTCCCAAGCCTTCCTGATATGTCCCCTAAAAAAGTGTCTGCCACACACAATGTGTATGTCTCTCCATTACGGTCATCCAAGATGGATGCTCTAATCTCACATAGCTCCAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCCTATCAGAGCCCTTCAAAAGACCTGACTGCCATAAACAATCGGTTAAACAGCAACCGCAGAGTAAGAGGACCCCTCAAATTTGATGATGTCGACGTGGGCTTGGTTAGCGACTCTATGGTTGCAAACAGCCTTTATCTGCAGAACGGAAGTTCTGCGTCATCATCTGGTGCACCGTTGAAGTCTGAGCAACCTGACTCTTAA 3081 0.4239 MSPSAETEMEDAKSSVVDADNGDQADSRFAEFSKNELALDEKSCKEAMDLFRETKHLLMANVSSMGNGTTEEAERYWFAFILYSIKRLTQKNEESEKEENENTGLTLCRILRAAKLNISDFFKELPQFVVKAGPILSNLYGSDWENKLEAKEMQANTIHLKILSKYYKRVFEEFFVSTDANVENKASVTNRVSEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISIMAILIIHVPARFRNFNIHDSSRFVKKSSKGVDLLASLCNTYNTSEDELRKTMEQANKLVADILKKTPCLASECKTENLENFDKDGLTYFKDLMEESSLPSSLNMLENDYDHMTRNKGDLDERLFINEDDSLLASGSLSGGSVSAGGVKRKFDLMMSPAKTITSPLSPHRSPASHANGIPGSANSKIAATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDRDITSEVIRRGQIILQAIFPSSPLGDRCVTGSLQSANLMDNIWAEQRRLEAMKLYYRLLATMCRAEAQILGNNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSAEINRLGMLAEPMPSLDEIAMQINFSCGGLPPVPSLPKPEALPVQNGDIRSPKRLCTENRNVLVERNSFTSPVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGGSRHRTGQEHIDIISFYNEVFIPSVKPLLVELGPGGATVRSDQIPEANNKNDGHLVQNPGSPRISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRRVRGPLKFDDVDVGLVSDSMVANSLYLQNGSSASSSGAPLKSEQPDS* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1814 1026 SUPERFAMILY Cyclin-like 738 914 IPR036915 -
Mal5g1814 1026 Gene3D - 701 896 - -
Mal5g1814 1026 SUPERFAMILY Cyclin-like 424 618 IPR036915 -
Mal5g1814 1026 Coils Coil 268 292 - -
Mal5g1814 1026 Pfam Retinoblastoma-associated protein A domain 416 616 IPR002720 GO:0005634|GO:0051726
Mal5g1814 1026 SMART RB_A_2 416 616 IPR002720 GO:0005634|GO:0051726
Mal5g1814 1026 MobiDBLite consensus disorder prediction 1007 1026 - -
Mal5g1814 1026 SMART DUF3452_2 88 234 IPR024599 -
Mal5g1814 1026 Gene3D - 419 606 - -
Mal5g1814 1026 Pfam Domain of unknown function (DUF3452) 99 234 IPR024599 -
Mal5g1814 1026 Pfam Retinoblastoma-associated protein B domain 740 871 IPR002719 GO:0005634|GO:0051726
Mal5g1814 1026 Gene3D - 194 353 - -
Mal5g1814 1026 Coils Coil 329 349 - -
Mal5g1814 1026 PANTHER BNACNNG22930D PROTEIN 20 1013 - -
Mal5g1814 1026 MobiDBLite consensus disorder prediction 1 22 - -
Mal5g1814 1026 MobiDBLite consensus disorder prediction 389 411 - -
Mal5g1814 1026 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 1013 IPR028309 GO:0006357|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1814 Mal-Chr5 37163380 37170756 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Mal5g1814 RB_A 9e-62 CL0065