Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1812 ATGCAGATTCCAAATGATTTGGAAGTGGGATATGTTCCTTTGAGCATGGGTGGAGCATATCCTGGCCTCTACCTCTTCACATCCCCTTCAAGATTTGTTCGCCCAGTGAGAAATATATCAATCCCTTCCGATGGAAATGAAAACATTGAACTCATTGGTCCATTTGAACAGGTTTTTATGGAGATACGATGTCCTGACGGTGGAGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCATGAGGAAATCCATCCAACAGGAATGCTAAGTGTAGTTGCTAATCTTACACCATGGTCAGATCATAATCAGAGCCCACGTAATATGTACCAGTGCCAGATGGCAAAGCAAACAATGGCATTTTCTTCACAAACGATTCAACATCGTGCAGATCAGAAGTTATATCATCTTCAGACTCCTCAGACTCCCATCGTTCGAACAAGTGCATATACTGAATACAACATTGATGAATTTCCAACAGGCACAAATGCTATAGTTGCAGTTCTGGCATATACAGGATATGATATGGAGGATGCCATGATTCTAAACAAGTCATCTGTGGAACGTGGAATGTTTCATGGACAAATATATCAGACAGAAACTATTGACTTGGCAGAGCGAGGCAGCCACGCAGAACGATCTTCAAGAATATTCAGAAAAAGTAACTTAGATAAAGCTTGTCCCGCGATTGATTCAGATGGACTTCCGCATGTTGGTCAGATGATACAGCCAGATGAACCCTATTGTAGCACTTACAATGAAGTATCAAGTCAAACATATCTCTTCCGAAAAAAGGGTACTGAACCTGCTTATGTTGACTATGTTGCTGTTGACGTCAAAAATAAGAAGCATCTAAGGAAGGCTAACATACGTTTTCGACACCCTCGAAACCCTGTCATTGGTGATAAATTTAGCAGTAGACACGGGCAGAAAGGTGTTTGCTCTCAGTTGTGGCCAGACATTGACATGCCATTTTCTGGAAATACGGGGATGCGCCCAGATCTCATTATAAATCCTCATGCATTTCCTTCTAGGATGACGATTGCTATGCTTTTGGAATCTGTTGCTGCTAAGGGAGGTAGTTTACATGGAAAATTTAAAGATGCAACTCCATTTCGTAGTTCAGTGGATTCTGGATCCAAATCGGCTTCGCTTGTTGATGAGCTTGGTGATATGTTAAAAGAGAAGGGATTTAATTACCATGGATGTGAGGTTCTTTACAGTGGGGTCTATGGAACAGAACTGACGTGTGAAATATTTATTGGGCCTGTTTATTATCAGCGGCTTCGTCACATGGTTTCAGACAAATACCAAGTTCGATCTACCGGCACTGTTGACCAGATCACCCGGCAGCCAATAAAAGGACGAAAGCGTGGTGGGGGAATACGATTTGGAGAAATGGAACGCGACTCTCTACTAGCACACGGGGCTGCATATCTTCTGCATGATAGGTTGCACACTTGTTCTGATTATCACATCGCAGATGTGTGTTCCATTTGTGGAACCATGCTTTCGACAACATTCATCGAGCCTCAAAAGCAGCCAGTTGCGAAGATTACTGGACTTCCACCACAAATAAGAGCTCCAAGAAAAGTCACTTGTCATGCTTGCCAAACCAGTAAAGGCATGGAGACAGTAGCCATGCCTTATATATTTAGATATTTGGCAGCAGAGTTAGCAGCTATGAACATTAAAATGACTCTTAAGTTACATAATGGAGCTAACATCTCTGAAAATGGGGCTTGA 1743 0.4223 MQIPNDLEVGYVPLSMGGAYPGLYLFTSPSRFVRPVRNISIPSDGNENIELIGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSAYTEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLAERGSHAERSSRIFRKSNLDKACPAIDSDGLPHVGQMIQPDEPYCSTYNEVSSQTYLFRKKGTEPAYVDYVAVDVKNKKHLRKANIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDIDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFKDATPFRSSVDSGSKSASLVDELGDMLKEKGFNYHGCEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQITRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSICGTMLSTTFIEPQKQPVAKITGLPPQIRAPRKVTCHACQTSKGMETVAMPYIFRYLAAELAAMNIKMTLKLHNGANISENGA* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1812 580 ProSitePatterns RNA polymerases beta chain signature. 300 312 IPR007121 GO:0003677|GO:0003899|GO:0006351
Mal5g1812 580 Pfam RNA polymerase I, Rpa2 specific domain 2 34 IPR009674 GO:0003899|GO:0005634|GO:0006351
Mal5g1812 580 Pfam RNA polymerase Rpb2, domain 7 459 568 IPR007641 GO:0003677|GO:0003899|GO:0006351
Mal5g1812 580 Gene3D RNA polymerase alpha subunit dimerisation domain 444 571 - -
Mal5g1812 580 Gene3D - 123 296 IPR014724 GO:0003899
Mal5g1812 580 Gene3D - 1 28 - -
Mal5g1812 580 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2 60 567 - -
Mal5g1812 580 Pfam RNA polymerase Rpb2, domain 6 92 457 IPR007120 GO:0003677|GO:0003899|GO:0006351
Mal5g1812 580 CDD RNA_pol_B_RPB2 79 568 IPR015712 GO:0003899|GO:0006351|GO:0032549
Mal5g1812 580 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 7 571 - -
Mal5g1812 580 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 60 567 IPR015712 GO:0003899|GO:0006351|GO:0032549
Mal5g1812 580 Gene3D - 93 442 IPR037033 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1812 Mal-Chr5 37085955 37095687 Dispersed