Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1742 ATGTCTTCACAACCTGAAAATCTTGATATGAAAGATGGATCAGGTCCACATAAAAGGCTAACAGATCTGATGCATCAAGCTGGAAACAGATTTTGCGCCGATTGTGGAACTCCAGAGCCGAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCACATATCAAAGGTTGCATCATTGAAGCTAGATGAATGGTCAGATGAACAAGTTGATATATTAGAGAAGTTTGGTGGAAATACATTGTTAAATAAAAAGTATGAAGCTTTCCTCCCAAGTAATGTAAAAAAACCAAAACCACATACCTCCATCGAAGAGCGCTCCGATTATATCAGGAAAAAATATGAGCAACTACAATTCATGGAGTGTGATGACAATTCATCAGGTGCAATTGTACCATCTCAAGGGAGAAGTTTATCATTGGCTCAAAGTAGTTCTTCATGTTACACATATCATATTGACAACAAAAAATACGAAAAAGCGCCAACCAGACATCGTATCGGACACGCATTCCGAAATAGCTGGACTAGAAAAGATTCTGAGCACAAGTCTTCAAAGAAGAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTAGAAAAGGAACTCACCTAGCTGTCAGAGATGTAGTGACCAGTGACCCTTATGTCATCCTTTCTTTGGGACACCAATCGGTAAAAACGCGCGTTATAAGGAACAATTTGAATCCAGTTTGGAATGAAAGTTTAATGCTATCAATTCCAGAAAACATTCCTCCCCTTAAAGTGCTAGTGTATGATAAAGATACATTTTCAACCGACGATTTTATGGGTGAAGCTGAAATAGACATTCAACCACTAGTTTTAGCTGCAATTGCATACGAGAAATCTACAGCCAACGAGTCCATGCAGCTCGAGAAATTTGTAGCAAGCAAGGACAACACTCTTGTTAGAGATGGTGTCATATCTCTTGATGAAGGGAAAATCAAACAAGAAATCTCGGTGAGGCTACAGAATGTTGAGAGAGGTGTTCTTGAGATTGCCCTTGAGTGTGTTCCTCTTATTCAATAG 1101 0.3906 MSSQPENLDMKDGSGPHKRLTDLMHQAGNRFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVASLKLDEWSDEQVDILEKFGGNTLLNKKYEAFLPSNVKKPKPHTSIEERSDYIRKKYEQLQFMECDDNSSGAIVPSQGRSLSLAQSSSSCYTYHIDNKKYEKAPTRHRIGHAFRNSWTRKDSEHKSSKKSTSLAGMVEFVGLIKVNVRKGTHLAVRDVVTSDPYVILSLGHQSVKTRVIRNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSTANESMQLEKFVASKDNTLVRDGVISLDEGKIKQEISVRLQNVERGVLEIALECVPLIQ* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1742 366 MobiDBLite consensus disorder prediction 1 20 - -
Mal5g1742 366 CDD ArfGap 20 126 - -
Mal5g1742 366 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 207 301 IPR035892 -
Mal5g1742 366 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 13 366 - -
Mal5g1742 366 CDD C2_ArfGAP 209 353 - -
Mal5g1742 366 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Mal5g1742 366 SMART C2_3c 211 306 IPR000008 -
Mal5g1742 366 Gene3D C2 domain 208 363 IPR035892 -
Mal5g1742 366 ProSiteProfiles C2 domain profile. 193 308 IPR000008 -
Mal5g1742 366 Gene3D Arf GTPase activating protein 2 139 IPR038508 -
Mal5g1742 366 Pfam C2 domain 211 297 IPR000008 -
Mal5g1742 366 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Mal5g1742 366 SUPERFAMILY ArfGap/RecO-like zinc finger 18 132 IPR037278 -
Mal5g1742 366 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 366 IPR044518 GO:0005096|GO:0005543
Mal5g1742 366 SMART arf_gap_3 18 139 IPR001164 GO:0005096
Mal5g1742 366 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Mal5g1742 366 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Mal5g1742 366 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1742 Mal-Chr5 34522258 34525773 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g5165 2 121383473 121395229 Mal5g1742 5 34522258 34525773 PCT