Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1697 ATGCCAGGGAAACCTGAAACTGATGATTGGGGAGTAAAGCAAAGTCAGTTGCCATCTTCCATTTACTCTCATCAGCCTTGGTGGCTTGAAAATGCCTCCAAATCATCTTCAGTTGATCAGCTAAATGGTTCAATCATGAATGATATCACACATTCAGAGCCTTTGATTTCTCCTTCACTTTCTGTAACTCCTAAGTCAGGTGTTGACGTTGCAAAGGAGCACCGAAACATCAACCATGCTTTGTCCTCAACCGCATTTACCATGGGCAAACACCTTGATCCAAATTCACAGACGGAACTTGTTGGTCATTCAATTGCTTTAACATCGCCTTATTCAAATGGAAAGTTTGGTCAAATCTTGACTACTTATGGACAACAAGCTATGATGAACCCTCAGCTATACCAAATGCCTCATGCTAGAGTGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCGCGTGCTAAGGCTGAGCTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCATATCTTCATGAATCCCGTCACCTACATGCTTTAAGAAGGGCAAGGGGAAACGGTGGTCGCTTTCTCAATACAAAGAAGCTCGAACATAGCGATTCTAATGCCGCTCTAGAAAAAGGCAACAATACTGGTGCATCTTTGGCTATCAACAATGAGAATCAAGGCTCATCAAATGTGCCGCAGTCCATGCAGAAAATGCAGGGTTTTAACATTGGTTACTGTGATGGAAATGGCTTTACATCACTCTGCCATTCACAGGCAAATGGAAAACAGGAGGTTGGCTGCTTTGGTAAAGAGAGGAACTCAAATGGTGCTATTAAATGA 873 0.4204 MPGKPETDDWGVKQSQLPSSIYSHQPWWLENASKSSSVDQLNGSIMNDITHSEPLISPSLSVTPKSGVDVAKEHRNINHALSSTAFTMGKHLDPNSQTELVGHSIALTSPYSNGKFGQILTTYGQQAMMNPQLYQMPHARVLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGNGGRFLNTKKLEHSDSNAALEKGNNTGASLAINNENQGSSNVPQSMQKMQGFNIGYCDGNGFTSLCHSQANGKQEVGCFGKERNSNGAIK* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1697 290 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 70 254 IPR001289 GO:0003700|GO:0006355
Mal5g1697 290 ProSiteProfiles NF-YA/HAP2 family profile. 148 208 IPR001289 GO:0003700|GO:0006355
Mal5g1697 290 ProSitePatterns NF-YA/HAP2 subunit signature. 153 173 IPR018362 GO:0003677|GO:0016602
Mal5g1697 290 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 150 205 IPR001289 GO:0003700|GO:0006355
Mal5g1697 290 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 70 254 - -
Mal5g1697 290 Gene3D - 148 209 - -
Mal5g1697 290 PRINTS CCAAT-binding transcription factor subunit B signature 151 173 IPR001289 GO:0003700|GO:0006355
Mal5g1697 290 PRINTS CCAAT-binding transcription factor subunit B signature 182 205 IPR001289 GO:0003700|GO:0006355
Mal5g1697 290 SMART cbf3 147 208 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1697 Mal-Chr5 33478328 33481190 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mal5g1697 CBFB_NFYA 8.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1697 5 33478328 33481190 Mal5g1697 5 33478328 33481190 ECH