Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0546 ATGCAAGACCCAACAACATTCCAACCCATGAAACCAAATTTCCCAGAACAAGAACAACTCAAATGTCCACGTTGTGAATCAAACAACACAAAATTCTGCTACTACAACAACTACAATCTCTCACAACCTCGTCATTTTTGCAAAAACTGTAAAAGGTATTGGACAAAAGGTGGTGCTTTGAGGAACATCCCTGTTGGTGGTGGAACCCGAAAAGTCACAAAACGTTCTTCAAATTCCAAACGTTCAACAACATCATCTCAATCTCCATCTTCTCCTTCACCATCAACCGCTTCTTCAGCAGCTAAAGTTTCAGTTTCAGAATCTGACCCGACCCAGATTCATGTTGACCCGGTTGAGAGAAATTTTGGTGGAGGTAGTTTCAGTTCACTTCTTGCATCAACTGAACGATTTGGGAGTCTTTTTGAGGGTCTGAATTCAAATGGGTCGGGTTTAAAAATGGTGGAAATGGGTGAATTTGGTGAGAATTTGAACTGTGATCCGATTGTTAATTCGGATTCGGGTCATAACCCGAATGGTAGAAATGGTGAACCAGAGATCTTTCTTGGTTTGCAAAATGGTGATTCAAACTGTTGGAGTGATAATCATGGTTGGTCTGATCTTGCAATATACACTCCTAGCTCAACTTATCAGTAG 654 0.4083 MQDPTTFQPMKPNFPEQEQLKCPRCESNNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGTRKVTKRSSNSKRSTTSSQSPSSPSPSTASSAAKVSVSESDPTQIHVDPVERNFGGGSFSSLLASTERFGSLFEGLNSNGSGLKMVEMGEFGENLNCDPIVNSDSGHNPNGRNGEPEIFLGLQNGDSNCWSDNHGWSDLAIYTPSSTYQ* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0546 217 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Mal5g0546 217 MobiDBLite consensus disorder prediction 78 111 - -
Mal5g0546 217 MobiDBLite consensus disorder prediction 64 120 - -
Mal5g0546 217 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 217 - -
Mal5g0546 217 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 217 IPR045174 GO:0003700|GO:0006355
Mal5g0546 217 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Mal5g0546 217 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0546 Mal-Chr5 8462413 8463066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0546 5 141 C2C2-Dof Transcription Factor Family AT1G51700 56.028 6.30e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal5g0546 zf-Dof 9.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0546 - - qsu:112018035 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0546 5 8462413 8463066 Mal5g0546 5 8462413 8463066 ECH